Can you use devtools

[muschellij2]

Why can this not be installed using the "standard" github installer:

library(devtools)
install_github("ANTsR", "stnava")

?

[stnava]

you probably need to start R with sudo or something like that ... or you
may need to install cmake if you dont have it.

brian

On Sun, Mar 30, 2014 at 4:40 PM, muschellij2 [email protected]:

Why can this not be installed using the "standard" github installer:

library(devtools)
install_github("ANTsR", "stnava")

?

Reply to this email directly or view it on GitHubhttps://github.com//issues/1
.

[muschellij2]

You may need to install cmake, but I've found
install_github("stnava/ANTsR") to work fine - you may want people to try that first.

[hhongtai]

I am using PC with windows 7. While I was installing this package, it gave me the following warning and error. Anyone can kindly tell me how to fix this? Thanks.

*** arch - i386
Warning: running command 'make -f "Makevars.win" -f "C:/1/DOCUME1/R/R-311.1/etc/i386/Makeconf" -f "C:/Users/HONGTA1/DOCUME1/R/R-311.1/share/make/winshlib.mk" SHLIB_LDFLAGS='$(SHLIB_CXXLDFLAGS)' SHLIB_LD='$(SHLIB_CXXLD)' SHLIB="ANTsR.dll" OBJECTS="Atropos.o ImageMath.o KellyKapowski.o LabelClustersUniquely.o N3BiasFieldCorrection.o N4BiasFieldCorrection.o ResampleImageBySpacing.o ThresholdImage.o TileImages.o antsAffineInitializer.o antsApplyTransforms.o antsBinaryThresholdImageFilter.o antsImage.o antsImageClone.o antsImageList.o antsImageRead.o antsImageWrite.o antsMatrix.o antsMotionCorr.o antsPermuteAxesImageFilter.o antsRegistration.o antsThresholdImageFilter.o itkImageR.o sccan.o"' had status 127
ERROR: compilation failed for package 'ANTsR'

[stnava]

that's interesting ..... wish i could help but dont have a functional
windows compilation setup.

is this a recent version of antsr?

can you provide more information? compiler, R version, ANTsR version, etc.

and maybe a more complete set of compilation outputs?

brian

On Tue, Oct 14, 2014 at 4:51 PM, hhongtai [email protected] wrote:

I am using PC with windows 7. While I was installing this package, it gave
me the following warning and error. Anyone can kindly tell me how to fix
this? Thanks.

*** arch - i386
Warning: running command 'make -f "Makevars.win" -f
"C:/1/DOCUME1/R/R-311.1/etc/i386/Makeconf" -f
"C:/Users/HONGTA1/DOCUME1/R/R-311.1/share/make/winshlib.mk"
SHLIB_LDFLAGS='$(SHLIB_CXXLDFLAGS)' SHLIB_LD='$(SHLIB_CXXLD)'
SHLIB="ANTsR.dll" OBJECTS="Atropos.o ImageMath.o KellyKapowski.o
LabelClustersUniquely.o N3BiasFieldCorrection.o N4BiasFieldCorrection.o
ResampleImageBySpacing.o ThresholdImage.o TileImages.o
antsAffineInitializer.o antsApplyTransforms.o
antsBinaryThresholdImageFilter.o antsImage.o antsImageClone.o
antsImageList.o antsImageRead.o antsImageWrite.o antsMatrix.o
antsMotionCorr.o antsPermuteAxesImageFilter.o antsRegistration.o
antsThresholdImageFilter.o itkImageR.o sccan.o"' had status 127
ERROR: compilation failed for package 'ANTsR'

—
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#1 (comment).

[hhongtai]

Hey Brian,

Thank you. I never installed antsr before so I presume it is a recent version that I downloaded by using command 'install_github("stnava/ANTsR") '.
The R version is 3.1.1.
I am trying a few things now and will post here if I find the solution.

[stnava]

super! please do let me know if you get this to work and what experience
you had.... ultimately, i'd like to get this on cran but we need more
windows build info to make that happen!

brian

On Wed, Oct 15, 2014 at 10:46 AM, hhongtai [email protected] wrote:

Hey Brian,

Thank you. I never installed antsr before so I presume it is a recent
version that I downloaded by using command 'install_github("stnava/ANTsR")
'.
The R version is 3.1.1.
I am trying a few things now and will post here if I find the solution.

—
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#1 (comment).

[muschellij2]

Looks like this is recommended now, so I'll close.