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4 followers · 18 following
  • Norwegian Institute for Bioeconomy Research (NIBIO)/Norwegian Forest and Landscape Institute
  • Ås, Norway

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Stars

9 stars written in C++
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rrwick / Bandage

a Bioinformatics Application for Navigating De novo Assembly Graphs Easily

C++ 601 100 Updated Dec 3, 2022

nanoporetech / dorado

Oxford Nanopore's Basecaller

C++ 586 69 Updated Jan 21, 2025

chhylp123 / hifiasm

Hifiasm: a haplotype-resolved assembler for accurate Hifi reads

C++ 572 90 Updated Feb 1, 2025

skovaka / UNCALLED

Raw nanopore signal mapper that enables real-time targeted sequencing

C++ 524 45 Updated Mar 5, 2024

ksahlin / strobealign

Aligns short reads using dynamic seed size with strobemers

C++ 164 18 Updated Feb 6, 2025

ksahlin / strobemers

A repository for generating strobemers and evalaution

C++ 77 12 Updated Apr 16, 2024

ggonnella / gfaviz

Graphical interactive tool for the visualization of sequence graphs in GFA format.

C++ 67 2 Updated Feb 19, 2019

JensUweUlrich / ReadBouncer

Fast and scalable nanopore adaptive sampling

C++ 33 2 Updated Jun 6, 2023

BGI-Qingdao / HAST

HAST: Haplotype-Resolved Assembly for Synthetic Long Reads Using A Trio-Binning Strategy

C++ 18 1 Updated Apr 20, 2023