track_linearization

Linearize 2D position to 1D using an HMM

Installation

pip install track_linearization

Or

conda install -c edeno track_linearization

Or

git clone https://github.com/LorenFrankLab/track_linearization.git
python setup.py install

Usage

Developer Installation

1. Install miniconda (or anaconda) if it isn't already installed.
2. git clone https://github.com/LorenFrankLab/track_linearization.git
3. Setup editiable package with dependencies

cd <package folder>
conda env create -f environment.yml
conda activate track_linearization
python setup.py develop