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README.qmd
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README.qmd
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---
title: "Non-Coding RNAs Improve the Predictive Power of Network Medicine"
author: "Deisy Morselli Gysi and Albert-László Barabási"
format:
html:
toc: true
toc-depth: 4
toc-title: Contents
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editor: visual
theme: Flatly
---
Codes accompanying the paper "Non-Coding RNAs Improve the Predictive Power of Network Medicine" by D.M. Gysi & A.L. Barabasi doi: \<\>.
- Codes for the manuscript can be found in the folder: `./code`
- Code that reproduces results in manuscript and SI can be found in `00_Load.qmd`
- Code that run LCC, S\_{ab}, Jaccard Index are in `01_LCC_Sab.R`
- To recalculate co-expression network based on PCC and wTO, please refer to `02_Corr.R`.
- To calculate performance of the co-expression networks, please refer to `03_Corr_Performance.R`.
- Raw data necessary for reproducing the codes: `./data/input`.
- Raw datasets used to compute the co-expression networks are found in [GTEx dataset webpage](https://www.gtexportal.org/home/datasets "GTEx dataset webpage").
- Outcomes can be found in `./data/output`
- Figures generated by the codes can be found in `./figs`