contrib
Folders and files
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This directory contains various individuals' contributions to the gbrowse project, as well as some optional packages. Coverage Marco Valtas' plugin for displaying clone coverage. GeneFinder A plugin for Phil Green's GeneFinder Program TextDumper Don Jackson's plugin for dumping out current region of interest as a tab-delimited table. bulk_load_win.pl, pg_bulk_load_gff.PLS Early versions of windows and PostGres loaders. install_macosx Scripts that streamline the installation of GBrowse and its dependencies on Mac OS X. Contributed by Todd Harris. import_ncbi_mv_hs.pl Scott Saccone's script for importing NCBI gene builds into GFF format. blast2gff.pl Justin Reese's script for formatting BLAST output into loadable GFF files. conf_files Configuration files for: 01.yeast.conf yeast data 02.wormbase.conf c. elegans data 03.fly.conf fly data 04.human.conf human data 05.embl.conf data automatically loaded from Genbank/EMBL 06.biosql.conf biosql database schema 07.chado.conf chado database schema 08.genbank.conf data manually loaded from Genbank/EMBL