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11 stars written in Shell
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aidenlab / juicer

A One-Click System for Analyzing Loop-Resolution Hi-C Experiments

Shell 432 184 Updated Nov 22, 2024

marbl / merqury

k-mer based assembly evaluation

Shell 302 21 Updated Jun 28, 2024

aidenlab / 3d-dna

3D de novo assembly (3D DNA) pipeline

Shell 207 55 Updated Nov 29, 2023

VGP / vgp-assembly

VGP repository for the genome assembly working group

Shell 190 51 Updated Jun 12, 2023

arangrhie / T2T-Polish

Evaluation and polishing workflows for T2T genome assemblies

Shell 122 8 Updated Oct 16, 2024

shilpagarg / DipAsm

Shell 76 18 Updated Jun 12, 2020

Shuhua-Group / Chinese-Pangenome-Consortium-Phase-I

Shell 66 11 Updated Sep 24, 2024

stevekm / Bioinformatics

Bioinformatics analysis scripts, workflows, general code examples

Shell 53 15 Updated Feb 19, 2021

BGI-Qingdao / HicTrioBinning

Shell 11 Updated Nov 29, 2022

pgrady1322 / T2T-Polish

Forked from arangrhie/T2T-Polish

Fully automatic k-mer based polishing for genome assemblies. Based on original concept and design from Ivan Sovic, Ann McCartney, and Arang Rhie

Shell 5 Updated Jan 16, 2025

euginm / riag

A pipeline for rDNA detection in long reads and genome assembly

Shell 2 Updated Dec 12, 2019