No v1.1.6 on conda, and only prebuilt for MacOS (no source) on pypi

[eachanjohnson]

Describe the bug
I could not install the latest v1.1.6 release on Linux using either conda install umi_tools=1/1/6 or pip install umi_tools==1.1.6. Installing from GitHub works with pip install git+https://github.com/CGATOxford/[email protected].

To Reproduce
Try conda install umi_tools=1.1.6.

Expected behavior
To be able to install the v1.1.6 release.

Environment

• OS: Linux
• UMI-tools version 1.1.6
• How was UMI-tools installed (e.g pip/conda etc): N/A

Additional context
It looks like 1.1.6 isn't on the conda index at all, and only pre-built MacOS binaries and no source are available on pypi.

Additional context: thanks so much for continuing to maintain this great suite of tools! 🙇

[TomSmithCGAT]

Thank you for catching this @eachanjohnson! That'll teach me for rushing through a random blog post to remind myself how to upload packages to pypi 🤦

As suggested in the blog, I ran python setup.py bdist_wheel, when I should of run python setup.py sdist, hence the lack of source code in the upload. That's been rectified now.

I did note previously that bioconda didn't immediately update umi_tools, but figured I was just being too impatient and forgot to check back. Previously, the bioconda bot picked it up fairly quickly (within a few hours if I remember right). I'll check again tomorrow whether uploading the source is sufficient to get the bot to pick it up. If not, I'll make a manual PR. I'll leave this open until bioconda has the latest version too.

[eachanjohnson]

I have a GitHub action for uploading to pypi when a release is made. I could make a PR perhaps tomorrow to include it if helpful.

[TomSmithCGAT]

That would be really useful, thank you 🙏

I looked into using a Github action for automating the uploading, but I can't remember where I got stuck. Don't see any reason why a generic action shouldn't work perfectly fine here.