From d9e560d770af30853f1a090ce53b4ae5d67181c1 Mon Sep 17 00:00:00 2001
From: e-sollier <etienne.sollier@gmail.com>
Date: Thu, 31 Oct 2024 12:58:51 +0100
Subject: [PATCH] Update to use figeno 1.6.0

---
 pyjacker/html_reports.py | 2 +-
 pyjacker/pyjacker.py     | 3 ++-
 pyproject.toml           | 4 ++--
 3 files changed, 5 insertions(+), 4 deletions(-)

diff --git a/pyjacker/html_reports.py b/pyjacker/html_reports.py
index b7eadce..81c17db 100644
--- a/pyjacker/html_reports.py
+++ b/pyjacker/html_reports.py
@@ -145,7 +145,7 @@ def generate_individual_reports(df_result,df_TPM,breakpoints,CNAs,genes,ase_dir,
             config_ase={"general":{"reference":"custom","layout":"horizontal","genes_file":gtf_file}}
             config_ase["output"] = {"file":os.path.join(outdir,"Data/Figures/ASE/"+gene_name+"_"+sample+"."+image_format),"dpi":image_dpi,"width":100.0}
             config_ase["regions"] = [{"chr":chr,"start":gene_full.start,"end":gene_full.end}]
-            config_ase["tracks"] = [{"type":"ase","height":60,"margin_above":1.5,"ase_file":ase_file,"vcf_DNA":vcf_DNA,"grid":False},
+            config_ase["tracks"] = [{"type":"ase","height":60,"margin_above":1.5,"file":ase_file,"vcf_DNA":vcf_DNA,"grid":False},
                                     {"type":"genes","height":12.0,"margin_above":-2,"bounding_box": False,"genes":gene_name},
                                     {"type":"chr_axis","height": 10.0}]
             figeno_make(config_ase)
diff --git a/pyjacker/pyjacker.py b/pyjacker/pyjacker.py
index be63ccd..2d5565c 100644
--- a/pyjacker/pyjacker.py
+++ b/pyjacker/pyjacker.py
@@ -25,7 +25,8 @@ def __init__(self,config_file):
             self.output_dir = data_yaml["output_dir"]
             if "image_format" in data_yaml: self.image_format=data_yaml["image_format"]
             else: self.image_format="svg"
-            if "image_dpi" in data_yaml: self.image_dpi=data_yaml["image_dpi"]
+            if "image_dpi" in data_yaml: self.image_dpi= float(data_yaml["image_dpi"])
+            else: self.image_dpi=300
             self.cache_dir = os.path.join( self.output_dir,"cache")
             os.makedirs( self.cache_dir,exist_ok=True)
 
diff --git a/pyproject.toml b/pyproject.toml
index 7c7cf00..4e44c8c 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -7,7 +7,7 @@ packages = ["pyjacker"]
 
 [project]
 name = 'pyjacker'
-version = "1.0.1"
+version = "1.0.2"
 description = 'Enhancer hijacking detection from WGS and RNAseq.'
 readme = 'README.md'
 authors = [
@@ -27,7 +27,7 @@ dependencies = [
   "statsmodels>=0.13.5",
   "pyyaml>=6.0",
   "matplotlib>=3.4.3",
-  "figeno>=1.5.1"
+  "figeno>=1.6.0"
 ]
 
 [project.scripts]