BioContainers · Jun 11, 2024 · Jun 11, 2024 · Jun 12, 2024 · Jun 15, 2024 · Jun 15, 2024
Showing 835 changed files with 9,545 additions and 18,488 deletions.
diff --git a/.gitignore b/.gitignore
@@ -1,5 +1,7 @@
 ### Example user template
 
+.DS_Store
+
 # IntelliJ project files
 .idea
 *.iml

diff --git a/3d-dna/Dockerfile b/3d-dna/Dockerfile
@@ -0,0 +1,23 @@
+FROM debian:bullseye-slim
+
+LABEL software="3d-dna" \ 
+    base_image="debian:bullseye-slim" \  
+    about.summary="" \ 
+    about.home="https://github.com/aidenlab/3d-dna" \ 
+    software.version="180922" \ 
+    upstream.version="180922" \ 
+    version="1" \ 
+    about.copyright="Dudchenko, O., Batra, S.S., Omer, A.D., Nyquist, S.K., Hoeger, M., Durand, N.C., Shamim, M.S., Machol, I., Lander, E.S., Aiden, A.P., et al." \ 
+    about.license="MIT" \ 
+    dockerfile.author="Sebastian Bassi <sebastian@toyoko.io>" \
+     about.tags=""
+
+USER root
+ENV DEBIAN_FRONTEND noninteractive
+
+RUN apt update && apt-get install -y wget lastz openjdk-11-jdk python3-scipy python3-biopython && apt clean && apt purge && rm -rf /var/lib/apt/lists/* /tmp/*
+
+RUN wget https://github.com/aidenlab/3d-dna/archive/refs/tags/201008.tar.gz && tar xvfz 201008.tar.gz && rm 201008.tar.gz
+
+
+#RUN python3 -m venv biopython && . biopython/bin/activate && pip install biopython==1.84
diff --git a/abacas/1.3.1-3-deb/Dockerfile b/abacas/1.3.1-3-deb/Dockerfile
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diff --git a/adapterremoval/2.2.0-1-deb/Dockerfile b/adapterremoval/2.2.0-1-deb/Dockerfile
diff --git a/adapterremoval/2.2.3-1-deb/Dockerfile b/adapterremoval/2.2.3-1-deb/Dockerfile
diff --git a/adun-core/0.81-13-deb/Dockerfile b/adun-core/0.81-13-deb/Dockerfile
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