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Technology-invariant pipeline for spatial omics analysis (Xenium / Visium HD / MERSCOPE / CosMx / PhenoCycler / MACSima / ...) that scales to millions of cells
Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many other features.
Deep probabilistic analysis of single-cell and spatial omics data
Reference mapping for single-cell genomics
Single-cell analysis in Python. Scales to >1M cells.
An open and interoperable data framework for spatial omics data
Spatial reconstruction of dissociated single-cell data
Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data
SBMClone, a method for recovering tumor clonal composition from sparse single-cell mutation data