TODO

• filter blobs that are too close to each other
• remove strange regions from ROI!!!!
• implement test_dsb script

ssh -X -p 10001 ikorshun@localhost scp -P 10001 /mnt/sda3/data/kaggle-lung/stage1_sample_submission.csv ikorshun@localhost://mnt/storage/data/dsb3/

biggest nodule

1.3.6.1.4.1.14519.5.2.1.6279.6001.287966244644280690737019247886 (32 mm)

smallest nodule

1.3.6.1.4.1.14519.5.2.1.6279.6001.151764021165118974848436095034 (3 mm)

LUNA mm_shapes (z,y,x):

min z: (u'1.3.6.1.4.1.14519.5.2.1.6279.6001.952265563663939823135367733681', array([ 165.5, 254. , 254. ])) ])) max z: (u'1.3.6.1.4.1.14519.5.2.1.6279.6001.223098610241551815995595311693', array([ 416., 370., 370.])) min yx: (u'1.3.6.1.4.1.14519.5.2.1.6279.6001.300270516469599170290456821227', array([ 263.19999552, 236. , 236. ])) max yx: (u'1.3.6.1.4.1.14519.5.2.1.6279.6001.202811684116768680758082619196', array([ 332.5 , 499.99975586, 499.99975586])) (u'1.3.6.1.4.1.14519.5.2.1.6279.6001.174168737938619557573021395302', array([ 292.5 , 499.99975586, 499.99975586])) (u'1.3.6.1.4.1.14519.5.2.1.6279.6001.234400932423244218697302970157', array([ 357.5 , 499.99975586, 499.99975586])) (u'1.3.6.1.4.1.14519.5.2.1.6279.6001.803808126682275425758092691689', array([ 311.25 , 493.00018311, 493.00018311])) (u'1.3.6.1.4.1.14519.5.2.1.6279.6001.250863365157630276148828903732', array([ 371.25 , 486.00012207, 486.00012207]))

NEED TO CHECK

LUNA, strange image border: 1-1.3.6.1.4.1.14519.5.2.1.6279.6001.249530219848512542668813996730 LUNA 0-1.3.6.1.4.1.14519.5.2.1.6279.6001.233001470265230594739708503198

LUNA

generate blobs: test_seg_scan.py
probabilities for blobs (fpred): test_fpred_scan.py stats over segmentation blobs: evaluate_luna_seg_scan.py stats over fpred: evaluate_luna_fpred_scan.py

DSB

generate blobs: test_seg_scan_dsb.py fpred: test_fpred_scan_dsb.py plot rois as in the final data iterator: plot_dsb_roi.py train classifier: train_class_dsb.py