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Multiome training data #18

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ekinda opened this issue Feb 19, 2025 · 1 comment
Open

Multiome training data #18

ekinda opened this issue Feb 19, 2025 · 1 comment

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@ekinda
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ekinda commented Feb 19, 2025

Amazing paper! I want to ask about training data availability. In the S3 bucket there is only the fetal_adult dataset available. Is it possible to get access to the data from the other datasets (specifically lymph, pbmc and TFAtlas). I want to try some fine-tuning on these datasets.

Best regards,
Ekin

@fuxialexander
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Sorry...the original pbmc and lymph data were processed around one year ago and it's in an incompatible format with the current refactored codebase. The TFAtlas data, on the other hand was in a format that is ahead of the current branch but I haven't got time to port it over to the current one... The new data processing tutorial should be fair easily to apply to those multiome data though, as usually they will provide fragment files and h5ad for scanpy.

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