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Commits on Aug 30, 2017

• Merge pull request sanger-pathogens#195 from EdwardBetts/patch-1

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  andrewjpage

  authored
  54d0686

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• correct spelling mistake

  EdwardBetts

  authored
  ddd748c

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Commits on Aug 14, 2017

• Merge pull request sanger-pathogens#194 from martinghunt/master

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  martinghunt

  authored
  0ad71d7

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• Add curl

  martinghunt

  committed
  47c002b

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• Merge pull request sanger-pathogens#193 from martinghunt/bowtie2_version_issues

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  martinghunt

  authored
  2c10cdb

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• Version bump 2.10.1

  martinghunt

  committed
  20fe8c1

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• Change mapping options bor bowtie 2.3.1 and later

  martinghunt

  committed
  947e5dc

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• Merge pull request sanger-pathogens#192 from aunderwo/master

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  martinghunt

  authored
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Commits on Aug 13, 2017

• Fix utf-8 encoding problems

  antunderwood

  authored
  f59eb99

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Commits on Aug 11, 2017

• Merge pull request sanger-pathogens#191 from martinghunt/update_docker_file

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  martinghunt

  authored
  c0d7d8c

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• Install specific release instead of master branch

  martinghunt

  committed
  6b0f7fe

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Commits on Jun 28, 2017

• Merge pull request sanger-pathogens#182 from martinghunt/reviewer_issues

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  martinghunt

  authored
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• Version bump 2.10.0

  martinghunt

  committed
  b64fbf2

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• No filtering of complete genes (ie continue after frameshifts)

  martinghunt

  committed
  df65621

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• Output warnings to stderr about removed genes/variants

  martinghunt

  committed
  c8ea4a1

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• Remove log from y axis label

  martinghunt

  committed
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Commits on Jun 27, 2017

• Merge pull request sanger-pathogens#181 from martinghunt/task_expandflag

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  martinghunt

  authored
  9cb1dd4

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• New task expandflag

  martinghunt

  committed
  5de0da1

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• New class ReportFlagExpander

  martinghunt

  committed
  92db92c

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• New method to_comma_separated_string

  martinghunt

  committed
  80027bd

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Commits on May 24, 2017

• Merge pull request sanger-pathogens#179 from martinghunt/card_1.1.8

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  martinghunt

  authored
  77478ee

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• Version bump 2.9.4

  martinghunt

  committed
  e1c24ff

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• Bug fix parsing card 1.1.8 json

  martinghunt

  committed
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Commits on May 16, 2017

• Merge pull request sanger-pathogens#177 from ssjunnebo/master

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  ssjunnebo

  authored
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• update AUTHORS and LICENSE

  

  Sara Sjunnebo

  committed
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Commits on Apr 28, 2017

• Merge pull request sanger-pathogens#175 from martinghunt/getmlst_dots_in_names

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  martinghunt

  authored
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• Version bump 2.9.3

  

  Martin Hunt

  committed
  2d2cc58

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• Fix for Oxf_* names for Acinetobacter baumannii#1

  

  Martin Hunt

  committed
  9556863

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Commits on Apr 27, 2017

• Merge pull request sanger-pathogens#174 from martinghunt/bowtie2.3.1

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  martinghunt

  authored
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Commits on Apr 26, 2017

• Use legacy bowtie2.3.1

  

  Martin Hunt

  committed
  032898e

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• Version bump 2.9.2

  

  Martin Hunt

  committed
  63e47c7

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• Use bowtie2.3.1

  

  Martin Hunt

  committed
  9d08ec3

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• Fix bowtie2 options for v2.3.1

  

  Martin Hunt

  committed
  a85b4ca

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• New method version()

  

  Martin Hunt

  committed
  f8a73e4

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Commits on Apr 25, 2017

• spelling typo

  martinghunt

  authored
  d935aab

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