From 7d9e518d5cf898a2b0aa2bdedf29f6b54cac62c7 Mon Sep 17 00:00:00 2001 From: Sergey Koren Date: Fri, 27 Apr 2018 14:08:02 -0400 Subject: [PATCH] Add complementary bases for N (which is N), issue #880 and #881 --- src/AS_UTL/AS_UTL_reverseComplement.C | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/src/AS_UTL/AS_UTL_reverseComplement.C b/src/AS_UTL/AS_UTL_reverseComplement.C index 62fa95f97..918a4b056 100644 --- a/src/AS_UTL/AS_UTL_reverseComplement.C +++ b/src/AS_UTL/AS_UTL_reverseComplement.C @@ -46,11 +46,11 @@ inv[256] = { 0, 0, 0, 0, 0, 0, 0, 0, // 0x30 - 01234567 0, 0, 0, 0, 0, 0, 0, 0, // 0x38 - 89:;<=>? 0,'T', 0,'G', 0, 0, 0,'C', // 0x40 - @ABCDEFG - 0, 0, 0, 0, 0, 0, 0, 0, // 0x48 - HIJKLMNO + 0, 0, 0, 0, 0, 0, 'N', 0, // 0x48 - HIJKLMNO 0, 0, 0, 0,'A', 0, 0, 0, // 0x50 - PQRSTUVW 0, 0, 0, 0, 0, 0, 0, 0, // 0x58 - XYZ[\]^_ 0,'t', 0,'g', 0, 0, 0,'c', // 0x60 - `abcdefg - 0, 0, 0, 0, 0, 0, 0, 0, // 0x68 - hijklmno + 0, 0, 0, 0, 0, 0, 'n', 0, // 0x68 - hijklmno 0, 0, 0, 0,'a', 0, 0, 0, // 0x70 - pqrstuvw 0, 0, 0, 0, 0, 0, 0, 0, // 0x78 - xyz{|}~ 0, 0, 0, 0, 0, 0, 0, 0, // 0x80 -