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Commits on Feb 20, 2024

• Update README.md

  Show description for 883b765
  KLab-UT

  authored
  883b765

• Update README.md

  Show description for 5c57fdf
  KLab-UT

  authored
  5c57fdf

Commits on Feb 13, 2024

• updated fork link

  KLab-UT

  committed
  34165e8

• updated readme

  KLab-UT

  committed
  9f1a982

Commits on Mar 24, 2023

• Merge branch 'main' of https://github.com/KLab-UT/trimming_raw_reads into main

  

  Randy Klabacka

  committed
  d2564ba

• fixed argument case error for working dir

  

  Randy Klabacka

  committed
  1019a2d

• removed mem option

  

  Randy Klabacka

  committed
  a6383c3

• created flag for working directory

  

  Randy Klabacka

  committed
  fc03a10

• removed swapped trim script

  

  Randy Klabacka

  committed
  481f7a3

• re-modified site where sbatch is done

  

  Randy Klabacka

  committed
  3aaac02

• adjusted directory for sbatch command

  

  Randy Klabacka

  committed
  d54592f

Commits on Mar 23, 2023

• adjusted q numbers in worksheet

  

  Randy Klabacka

  committed
  3b86c61

• added unmerged question to worksheet

  

  Randy Klabacka

  committed
  04606e7

• updated worksheet to focus on merged reads instead of r1 and r2 post filtering

  

  Randy Klabacka

  committed
  b123802

Commits on Mar 8, 2023

• fixed sra toolkit, fastp, and multiqc bugs and updated the slurm account for students

  

  Randy Klabacka

  committed
  7b41f3a

• troubleshooting fastp and fastqc

  

  Randy Klabacka

  committed
  0e7092e

Commits on Mar 7, 2023

• Merge branch 'main' of https://github.com/KLab-UT/trimming_raw_reads into main

  

  Randy Klabacka

  committed
  e95795f

• fixed loop bug (extra \)

  

  Randy Klabacka

  committed
  b22f13d

Commits on Mar 6, 2023

• changed 'utu' to 'biol4310' for acct

  KLab-UT

  committed
  6d197ee

Commits on Mar 4, 2023

• added information on making sure path is correct in q.main.sh file

  

  Randy Klabacka

  committed
  47b40c7

• updated the README to include info on editing the trimming script

  

  Randy Klabacka

  committed
  fd14c30

• Delete slurm-5774161.err-lp176

  KLab-UT

  authored
  bad9add

• Delete slurm-5774161.out-lp176

  KLab-UT

  authored
  fee59f1

• updated trim_raw_reads.sh to first complete draft- running it now on CHPC. Created worksheet.md with questions

  

  Randy Klabacka

  committed
  4c2c349

• added to trimming script- still not complete

  

  Randy Klabacka

  committed
  174171a

Commits on Mar 2, 2023

• updated readme, created worksheet.md

  

  Randy Klabacka

  committed
  c2179a3

• updated trimming table

  

  Randy Klabacka

  committed
  3dbb176

Commits on Mar 1, 2023

• Merge branch 'main' of https://github.com/KLab-UT/trimming_raw_reads into main

  

  Randy Klabacka

  committed
  d6e20b2

• updated readme and added a main function to download sra data

  

  Randy Klabacka

  committed
  3a35d07

Commits on Feb 28, 2023

• fixed scp command

  KLab-UT

  committed
  9516a3d

• edited scp section of repository

  

  Randy Klabacka

  committed
  cc2316c

Commits on Feb 24, 2023

• added to the fastp table up until the 'merge paired end' section

  

  Randy Klabacka

  committed
  9ce9da8

• added to fastp table

  

  Randy Klabacka

  committed
  d2bda37

Commits on Feb 23, 2023

• created fastp option table

  

  Randy Klabacka

  committed
  715c6d3

• readme update

  

  Randy Klabacka

  committed
  1cfb7b2

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