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Dialogs.py
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# This is part of the AviaNZ interface
# Holds most of the code for the various dialog boxes
# Version 3.0 14/09/20
# Authors: Stephen Marsland, Nirosha Priyadarshani, Julius Juodakis, Virginia Listanti
# AviaNZ bioacoustic analysis program
# Copyright (C) 2017--2020
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
# You should have received a copy of the GNU General Public License
# along with this program. If not, see <http://www.gnu.org/licenses/>.
# Dialogs used by the AviaNZ program
# Since most of them just get user selections, they are mostly just a mess of UI things
import os
import shutil
from PyQt5.QtGui import *
from PyQt5.QtWidgets import *
from PyQt5.QtCore import QPointF, QTime, Qt, QSize
import pyqtgraph as pg
from pyqtgraph.Qt import QtCore, QtGui
import numpy as np
import colourMaps
import SupportClasses_GUI
import SignalProc
import SupportClasses
import openpyxl
import json
pg.setConfigOption('background','w')
pg.setConfigOption('foreground','k')
pg.setConfigOption('antialias',True)
class StartScreen(QDialog):
def __init__(self, parent=None):
QDialog.__init__(self, parent)
self.setWindowIcon(QIcon('img/AviaNZ.ico'))
self.setWindowTitle('AviaNZ - Choose Task')
self.setWindowFlags((self.windowFlags() ^ Qt.WindowContextHelpButtonHint) | Qt.FramelessWindowHint | Qt.WindowCloseButtonHint)
self.setAutoFillBackground(False)
self.setMinimumSize(860, 350)
self.setStyleSheet("QDialog {background-image: url(img/AviaNZ_SW_V2.jpg); background-repeat: no-repeat; background-color: #242021; background-position: top center;}")
self.activateWindow()
# #242021 for the bgcolor of that image
# btn_style='QPushButton {background-color: #A3C1DA; color: white; font-size:20px; font-weight: bold; font-family: "Arial"}'
btn_style=""" QAbstractButton {background-color: #242021;
border-color: #b2c8da; border-width:2px; border-style: outset;
color: white; font-size:21px; font-weight: bold; font-family: "Arial"; padding: 3px;}
QAbstractButton:pressed {border-style: inset;}
"""
b1 = QPushButton(" Manual Processing ")
b2 = QPushButton(" Batch Processing ")
b3 = QPushButton(" Review Batch Results ")
b1.setStyleSheet(btn_style)
b2.setStyleSheet(btn_style)
b3.setStyleSheet(btn_style)
bclose = QtGui.QToolButton()
bclose.setIcon(QtGui.QIcon('img/close.png'))
bclose.setIconSize(QSize(40, 40))
bclose.setToolTip("Close")
bclose.setStyleSheet(btn_style)
bclose.clicked.connect(self.reject)
hboxclose = QHBoxLayout()
hboxclose.addWidget(bclose, alignment=Qt.AlignRight)
hbox = QHBoxLayout()
hbox.addStretch(5)
hbox.addWidget(b1)
hbox.addStretch(4)
hbox.addWidget(b2)
hbox.addStretch(4)
hbox.addWidget(b3)
hbox.addStretch(5)
#hbox.addWidget(b4)
vbox = QVBoxLayout()
vbox.addLayout(hboxclose)
vbox.addSpacing(180)
vbox.addStretch(1)
vbox.addLayout(hbox)
vbox.addStretch(1)
self.setLayout(vbox)
b1.clicked.connect(self.manualSeg)
b2.clicked.connect(self.findSpecies)
b3.clicked.connect(self.reviewSeg)
#b4.clicked.connect(self.utilities)
self.task = -1
def manualSeg(self):
self.task = 1
self.accept()
def findSpecies(self):
self.task = 2
self.accept()
def reviewSeg(self):
self.task = 3
self.accept()
#def utilities(self):
#self.task = 4
#self.accept()
def getValues(self):
return self.task
#======
class FileDataDialog(QDialog):
def __init__(self, name, date, time, parent=None):
super(FileDataDialog, self).__init__(parent)
layout = QVBoxLayout(self)
l1 = QLabel("Annotator")
self.name = QLineEdit(self)
self.name.setText(name)
l2 = QLabel("Data recorded: " + date)
l3 = QLabel("Time recorded: " + time)
layout.addWidget(l1)
layout.addWidget(self.name)
layout.addWidget(l2)
layout.addWidget(l3)
button = QPushButton("OK")
button.clicked.connect(self.accept)
layout.addWidget(button)
def getData(self):
return
#======
class Spectrogram(QDialog):
# Class for the spectrogram dialog box
# TODO: Steal the graph from Raven (View/Configure Brightness)
def __init__(self, width, incr, minFreq, maxFreq, minFreqShow, maxFreqShow, window, sgtype='Standard', batmode=False, parent=None):
QDialog.__init__(self, parent)
self.setWindowTitle('Spectrogram Options')
self.setWindowIcon(QIcon('img/Avianz.ico'))
self.setWindowFlags((self.windowFlags() ^ Qt.WindowContextHelpButtonHint) | Qt.WindowCloseButtonHint)
self.setMinimumWidth(300)
self.windowType = QComboBox()
self.windowType.addItems(['Hann','Parzen','Welch','Hamming','Blackman','BlackmanHarris'])
self.windowType.setCurrentText(window)
self.sgType = QComboBox()
self.sgType.addItems(['Standard','Multi-tapered','Reassigned'])
self.sgType.setCurrentText(sgtype)
self.mean_normalise = QCheckBox()
self.mean_normalise.setChecked(True)
self.equal_loudness = QCheckBox()
self.equal_loudness.setChecked(False)
self.low = QSlider(Qt.Horizontal)
self.low.setTickPosition(QSlider.TicksBelow)
self.low.setTickInterval(1000)
self.low.setSingleStep(100)
self.low.valueChanged.connect(self.lowChange)
self.lowtext = QLabel()
self.lowtext.setAlignment(Qt.AlignRight)
self.lowChange(minFreqShow)
self.high = QSlider(Qt.Horizontal)
self.high.setTickPosition(QSlider.TicksBelow)
self.high.setTickInterval(1000)
self.high.setSingleStep(100)
self.high.valueChanged.connect(self.highChange)
self.hightext = QLabel(str(self.high.value()) + ' Hz')
self.hightext.setAlignment(Qt.AlignRight)
self.highChange(maxFreqShow)
self.labelMinF = QLabel()
self.labelMaxF = QLabel()
self.labelMaxF.setAlignment(Qt.AlignRight)
self.setValues(minFreq, maxFreq, minFreqShow, maxFreqShow)
self.restore = QPushButton("Restore Defaults && Update")
self.restore.clicked.connect(self.resetValues)
self.activate = QPushButton("Update Spectrogram")
self.window_width = QLineEdit(self)
self.window_width.setValidator(QIntValidator(1, 128000))
self.window_width.setText(str(width))
self.incr = QLineEdit(self)
self.incr.setValidator(QIntValidator(1, 128000))
self.incr.setText(str(incr))
Box = QVBoxLayout()
form = QFormLayout()
form.addRow('Window', self.windowType)
form.addRow('Spectrogram type', self.sgType)
form.addRow('Mean normalise', self.mean_normalise)
form.addRow('Equal loudness', self.equal_loudness)
#form.addRow('Multitapering', self.multitaper)
#form.addRow('Reassignment', self.reassigned)
form.addRow('Window width', self.window_width)
form.addRow('Hop', self.incr)
form.setVerticalSpacing(15)
# Most of the settings can't be changed when using BMPs:
if batmode:
for i in range(form.count()):
form.itemAt(i).widget().setEnabled(False)
form2 = pg.LayoutWidget()
form2.addWidget(QLabel('Lowest frequency'), row=0, col=0)
form2.addWidget(self.lowtext, row=0, col=1)
form2.addWidget(self.low, row=1, col=0, colspan=2)
form2.addWidget(QLabel('Highest frequency'), row=2, col=0)
form2.addWidget(self.hightext, row=2, col=1)
form2.addWidget(self.high, row=3, col=0, colspan=2)
form2.addWidget(self.labelMinF, row=4, col=0)
form2.addWidget(self.labelMaxF, row=4, col=1)
Box.addLayout(form)
Box.addSpacing(15)
Box.addWidget(QLabel('Frequency range to show:'))
Box.addWidget(form2)
Box.addWidget(self.activate)
Box.addWidget(self.restore)
# Now put everything into the frame
self.setLayout(Box)
def setValues(self,minFreq,maxFreq,minFreqShow,maxFreqShow):
self.low.setRange(minFreq,maxFreq)
self.low.setValue(minFreqShow)
self.high.setRange(minFreq,maxFreq)
self.high.setValue(maxFreqShow)
self.labelMinF.setText(str(minFreq))
self.labelMaxF.setText(str(maxFreq))
def getValues(self):
if not self.incr.hasAcceptableInput() or not self.window_width.hasAcceptableInput():
print("ERROR: bad window parameters specified, overriding")
self.incr.setText('128')
self.window_width.setText('256')
low = int(self.low.value() // 100 *100)
high = int(self.high.value() // 100 *100)
return [self.windowType.currentText(),self.sgType.currentText(),self.mean_normalise.checkState(),self.equal_loudness.checkState(),self.window_width.text(),self.incr.text(),low,high]
def lowChange(self,value):
# NOTE returned values should also use this rounding
value = value // 100 * 100
self.lowtext.setText(str(value)+' Hz')
def highChange(self,value):
value = value // 100 * 100
self.hightext.setText(str(value)+' Hz')
def resetValues(self):
self.windowType.setCurrentText('Hann')
self.mean_normalise.setChecked(True)
self.equal_loudness.setChecked(False)
#self.multitaper.setChecked(False)
#self.reassigned.setChecked(False)
self.setValues(self.low.minimum(), self.low.maximum(), self.low.minimum(), self.high.maximum())
self.window_width.setText('256')
self.incr.setText('128')
self.activate.clicked.emit()
# def closeEvent(self, event):
# msg = QMessageBox()
# msg.setIcon(QMessageBox.Question)
# msg.setText("Do you want to keep the new values?")
# msg.setWindowTitle("Closing Spectrogram Dialog")
# msg.setStandardButtons(QMessageBox.Yes|QMessageBox.No)
# msg.buttonClicked.connect(self.resetValues)
# msg.exec_()
# return
#======
class Excel2Annotation(QDialog):
# Class for Excel to AviaNZ annotation
def __init__(self, parent=None):
QDialog.__init__(self, parent)
self.setWindowTitle('Generate annotations from Excel')
self.setWindowIcon(QIcon('img/Avianz.ico'))
self.setWindowFlags((self.windowFlags() ^ Qt.WindowContextHelpButtonHint) | Qt.WindowCloseButtonHint)
self.setMinimumWidth(700)
self.txtExcel = QLineEdit()
self.txtExcel.setMinimumWidth(400)
self.txtExcel.setText('')
self.btnBrowseExcel = QPushButton("&Browse Excel")
self.btnBrowseExcel.setFixedWidth(220)
self.btnBrowseExcel.clicked.connect(self.browseExcel)
lblHeader = QLabel('Choose Columns')
lblHeader.setFixedWidth(220)
lblHeader.setAlignment(Qt.AlignCenter)
self.comboStart = QComboBox()
self.comboEnd = QComboBox()
self.comboLow = QComboBox()
self.comboHigh = QComboBox()
self.txtAudio = QLineEdit()
self.txtAudio.setMinimumWidth(400)
self.txtAudio.setText('')
self.btnBrowseAudio = QPushButton("Browse Corresponding Audio")
self.btnBrowseAudio.setFixedWidth(220)
self.btnBrowseAudio.setToolTip("Select corresponding .wav")
self.btnBrowseAudio.clicked.connect(self.browseAudio)
self.txtSpecies = QLineEdit()
self.txtSpecies.setMinimumWidth(400)
self.txtSpecies.setText('')
lblSpecies = QLabel("Species Name")
lblSpecies.setFixedWidth(220)
lblSpecies.setAlignment(Qt.AlignCenter)
self.btnGenerateAnnot = SupportClasses_GUI.MainPushButton("Generate AviaNZ Annotation")
# Show a template
tableWidget = QTableWidget()
tableWidget.setRowCount(4)
tableWidget.setColumnCount(4)
tableWidget.setHorizontalHeaderLabels("A;B;C;D".split(";"))
tableWidget.horizontalHeader().setSectionResizeMode(QHeaderView.Stretch)
tableWidget.setItem(0, 0, QTableWidgetItem("Start time (sec)"))
tableWidget.setItem(0, 1, QTableWidgetItem("End time (sec)"))
tableWidget.setItem(0, 2, QTableWidgetItem("Lower frequency (Hz)"))
tableWidget.setItem(0, 3, QTableWidgetItem("Upper frequency (Hz)"))
tableWidget.setItem(1, 0, QTableWidgetItem("42.15"))
tableWidget.setItem(1, 1, QTableWidgetItem("48.24"))
tableWidget.setItem(1, 2, QTableWidgetItem("546.26"))
tableWidget.setItem(1, 3, QTableWidgetItem("7492.35"))
tableWidget.setItem(2, 0, QTableWidgetItem("88.54"))
tableWidget.setItem(2, 1, QTableWidgetItem("95.25"))
tableWidget.setItem(2, 2, QTableWidgetItem("550.74"))
tableWidget.setItem(2, 3, QTableWidgetItem("7505.25"))
tableWidget.setItem(3, 0, QTableWidgetItem("684.15"))
tableWidget.setItem(3, 1, QTableWidgetItem("699.74"))
tableWidget.setItem(3, 2, QTableWidgetItem("560.25"))
tableWidget.setItem(3, 3, QTableWidgetItem("8000.30"))
tableWidget.setMinimumWidth(700)
tableWidget.setStyleSheet("QTableWidget { color : #808080; }")
tableWidget.setEditTriggers(QAbstractItemView.NoEditTriggers)
Box = QVBoxLayout()
Box.addWidget(QLabel('Sample Excel:'))
Box.addWidget(tableWidget)
Box.addWidget(QLabel())
Box1 = QHBoxLayout()
Box1.addWidget(self.btnBrowseExcel)
Box1.addWidget(self.txtExcel)
Box10 = QHBoxLayout()
Box11 = QVBoxLayout()
Box11.addWidget(QLabel('Start time'))
Box11.addWidget(self.comboStart)
Box12 = QVBoxLayout()
Box12.addWidget(QLabel('End time'))
Box12.addWidget(self.comboEnd)
Box13 = QVBoxLayout()
Box13.addWidget(QLabel('Lower frequency'))
Box13.addWidget(self.comboLow)
Box14 = QVBoxLayout()
Box14.addWidget(QLabel('Higher frequency'))
Box14.addWidget(self.comboHigh)
Box10.addWidget(lblHeader)
Box10.addLayout(Box11)
Box10.addLayout(Box12)
Box10.addLayout(Box13)
Box10.addLayout(Box14)
Box2 = QHBoxLayout()
Box2.addWidget(self.btnBrowseAudio)
Box2.addWidget(self.txtAudio)
Box3 = QHBoxLayout()
Box3.addWidget(lblSpecies)
Box3.addWidget(self.txtSpecies)
Box.addLayout(Box1)
Box.addLayout(Box10)
Box.addLayout(Box2)
Box.addLayout(Box3)
Box.addWidget(QLabel())
Box.addWidget(self.btnGenerateAnnot)
# Now put everything into the frame
self.setLayout(Box)
def getValues(self):
if self.txtSpecies.text() and self.txtExcel.text() and self.txtAudio.text():
return [self.txtExcel.text(), self.txtAudio.text(), self.txtSpecies.text(), self.headers[self.comboStart.currentIndex()], self.headers[self.comboEnd.currentIndex()], self.headers[self.comboLow.currentIndex()], self.headers[self.comboHigh.currentIndex()]]
else:
msg = SupportClasses_GUI.MessagePopup("t", "All fields are Mandatory ", "All fields are Mandatory ")
msg.exec_()
return []
def browseExcel(self):
try:
if not self.txtAudio.text():
userDir = os.path.expanduser("~")
else:
userDir, _ = os.path.split(self.txtAudio.text())
excelfile, _ = QtGui.QFileDialog.getOpenFileName(self, 'Open file', userDir, "Excel (*.xlsx *.xls)")
self.txtExcel.setText(excelfile)
self.txtExcel.setReadOnly(True)
# Read the excel to get the headers
book = openpyxl.load_workbook(excelfile)
sheet = book.active
headers = [value for value in sheet.iter_rows(min_row=1, max_row=1)]
headers = [h for h in headers[0]]
self.headers = [h.column for h in headers]
values = [h.value for h in headers]
self.comboStart.addItems(values)
self.comboStart.setCurrentText(values[0])
self.comboEnd.addItems(values)
self.comboEnd.setCurrentText(values[1])
self.comboLow.addItems(values)
self.comboLow.setCurrentText(values[2])
self.comboHigh.addItems(values)
self.comboHigh.setCurrentText(values[3])
except Exception as e:
print("ERROR: failed with error:")
print(e)
return
def browseAudio(self):
try:
if not self.txtExcel.text():
userDir = os.path.expanduser("~")
else:
userDir, _ = os.path.split(self.txtExcel.text())
audiofile, _ = QtGui.QFileDialog.getOpenFileName(self, 'Open file', userDir, "Audio (*.wav)")
self.txtAudio.setText(audiofile)
self.txtAudio.setReadOnly(True)
except Exception as e:
print("ERROR: failed with error:")
print(e)
return
#======
class Tag2Annotation(QDialog):
# Class for XML Tag to AviaNZ annotation
def __init__(self, parent=None):
QDialog.__init__(self, parent)
self.setWindowTitle('Generate annotations from XML (Freebird)')
self.setWindowIcon(QIcon('img/Avianz.ico'))
self.setWindowFlags((self.windowFlags() ^ Qt.WindowContextHelpButtonHint) | Qt.WindowCloseButtonHint)
self.setMinimumWidth(700)
self.txtSession = QLineEdit()
self.txtSession.setMinimumWidth(400)
self.txtSession.setText('')
self.btnBrowseSession = QPushButton("&Browse Session")
self.btnBrowseSession.setFixedWidth(220)
self.btnBrowseSession.clicked.connect(self.browseSession)
self.txtDuration = QLineEdit()
self.txtDuration.setMinimumWidth(400)
self.txtDuration.setText('')
lblDuration = QLabel("Duration (sec) of a recording")
lblDuration.setFixedWidth(220)
lblDuration.setAlignment(Qt.AlignCenter)
self.btnGenerateAnnot = SupportClasses_GUI.MainPushButton("Generate AviaNZ Annotation")
Box = QVBoxLayout()
Box.addWidget(QLabel())
Box1 = QHBoxLayout()
Box1.addWidget(self.btnBrowseSession)
Box1.addWidget(self.txtSession)
Box2 = QHBoxLayout()
Box2.addWidget(lblDuration)
Box2.addWidget(self.txtDuration)
Box.addLayout(Box1)
Box.addLayout(Box2)
Box.addWidget(QLabel())
Box.addWidget(self.btnGenerateAnnot)
# Now put everything into the frame
self.setLayout(Box)
def getValues(self):
if self.txtDuration.text() and self.txtSession.text():
return [self.txtSession.text(), self.txtDuration.text()]
else:
msg = SupportClasses_GUI.MessagePopup("t", "All fields are Mandatory ", "All fields are Mandatory ")
msg.exec_()
return []
def browseSession(self):
dirName = QFileDialog.getExistingDirectory(self, 'Choose .session folder with .tag and .setting')
self.txtSession.setText(dirName)
#======
class BackupAnnotation(QDialog):
# Class for XML Tag to AviaNZ annotation
def __init__(self, parent=None):
QDialog.__init__(self, parent)
self.setWindowTitle('Backup annotations')
self.setWindowIcon(QIcon('img/Avianz.ico'))
self.setWindowFlags((self.windowFlags() ^ Qt.WindowContextHelpButtonHint) | Qt.WindowCloseButtonHint)
self.setMinimumWidth(700)
self.txtSrc = QLineEdit()
self.txtSrc.setMinimumWidth(400)
self.txtSrc.setText('')
self.btnBrowseSrc = QPushButton("&Browse Source Directory")
self.btnBrowseSrc.setFixedWidth(220)
self.btnBrowseSrc.clicked.connect(self.browseSrc)
self.txtDst = QLineEdit()
self.txtDst.setMinimumWidth(400)
self.txtDst.setText('')
self.btnBrowseDst = QPushButton("&Browse Destination Directory")
self.btnBrowseDst.setFixedWidth(220)
self.btnBrowseDst.clicked.connect(self.browseDst)
self.btnCopyAnnot = SupportClasses_GUI.MainPushButton("Copy Annotations")
Box = QVBoxLayout()
Box.addWidget(QLabel('This allows you to get a copy of your annotations while preserving the directory hierarchy, only copy the .data files.\nSelect the directory you want to backup the annotations from and create a destination directory to copy the annotations'))
Box.addWidget(QLabel())
Box1 = QHBoxLayout()
Box1.addWidget(self.btnBrowseSrc)
Box1.addWidget(self.txtSrc)
Box2 = QHBoxLayout()
Box2.addWidget(self.btnBrowseDst)
Box2.addWidget(self.txtDst)
Box.addLayout(Box1)
Box.addLayout(Box2)
Box.addWidget(QLabel())
Box.addWidget(self.btnCopyAnnot)
# Now put everything into the frame
self.setLayout(Box)
def getValues(self):
if self.txtSrc.text() and self.txtDst.text():
return [self.txtSrc.text(), self.txtDst.text()]
else:
msg = SupportClasses_GUI.MessagePopup("t", "All fields are Mandatory ", "All fields are Mandatory ")
msg.exec_()
return []
def browseSrc(self):
dirName = QFileDialog.getExistingDirectory(self, 'Choose the source folder to backup')
self.txtSrc.setText(dirName)
def browseDst(self):
dirName = QFileDialog.getExistingDirectory(self, 'Choose the destination folder')
self.txtDst.setText(dirName)
class OperatorReviewer(QDialog):
# Class for the set operator dialog box
def __init__(self, operator='', reviewer='', parent=None):
QDialog.__init__(self, parent)
self.setWindowTitle('Set Operator/Reviewer')
self.setWindowIcon(QIcon('img/Avianz.ico'))
self.setWindowFlags((self.windowFlags() ^ Qt.WindowContextHelpButtonHint))
self.setMinimumWidth(320)
self.operatorlabel = QLabel("Operator")
self.name1 = QLineEdit(self)
self.name1.setText(operator)
self.reviewerlabel = QLabel("Reviewer")
self.name2 = QLineEdit(self)
self.name2.setText(reviewer)
self.activate = QPushButton("Set")
Box = QVBoxLayout()
Box.addWidget(self.operatorlabel)
Box.addWidget(self.name1)
Box.addWidget(self.reviewerlabel)
Box.addWidget(self.name2)
Box.addWidget(self.activate)
# Now put everything into the frame
self.setLayout(Box)
def getValues(self):
#print(self.name1.text(),self.name2.text())
return [self.name1.text(),self.name2.text()]
#======
class addNoiseData(QDialog):
# Class for the noise data dialog box
# TODO: Options are hard-coded for now. Does it matter?
def __init__(self, noiseLevel, noiseTypes, parent=None):
QDialog.__init__(self, parent)
self.setWindowTitle('Noise Information')
self.setWindowIcon(QIcon('img/Avianz.ico'))
self.setWindowFlags((self.windowFlags() ^ Qt.WindowContextHelpButtonHint))
self.setMinimumWidth(320)
HBox1 = QVBoxLayout()
levelLabel = QLabel("Level of Noise")
HBox1.addWidget(levelLabel)
self.level = QButtonGroup()
self.btnLow = QRadioButton('Low')
self.level.addButton(self.btnLow)
if noiseLevel == 'Low':
self.btnLow.setChecked(True)
HBox1.addWidget(self.btnLow)
self.btnMed = QRadioButton('Medium')
self.level.addButton(self.btnMed)
if noiseLevel == 'Medium':
self.btnLow.setChecked(True)
HBox1.addWidget(self.btnMed)
self.btnHigh = QRadioButton('High')
self.level.addButton(self.btnHigh)
if noiseLevel == 'High':
self.btnLow.setChecked(True)
HBox1.addWidget(self.btnHigh)
self.btnTerrible = QRadioButton('Terrible')
self.level.addButton(self.btnTerrible)
HBox1.addWidget(self.btnTerrible)
if noiseLevel == 'Terrible':
self.btnLow.setChecked(True)
self.activate = QPushButton("Set")
HBox1.addWidget(self.activate)
HBox2 = QVBoxLayout()
typesLabel = QLabel("Types of Noise")
HBox2.addWidget(typesLabel)
self.types = QButtonGroup()
self.types.setExclusive(False)
self.btns = []
self.btns.append(QCheckBox('Rain'))
self.types.addButton(self.btns[0])
HBox2.addWidget(self.btns[0])
if 'Rain' in noiseTypes:
self.btns[0].setChecked(True)
self.btns.append(QCheckBox('Wind'))
self.types.addButton(self.btns[1])
HBox2.addWidget(self.btns[1])
if 'Wind' in noiseTypes:
self.btns[1].setChecked(True)
self.btns.append(QCheckBox('Wind Gusts'))
self.types.addButton(self.btns[2])
HBox2.addWidget(self.btns[2])
if 'Wind Gusts' in noiseTypes:
self.btns[2].setChecked(True)
self.btns.append(QCheckBox('Waves/water'))
self.types.addButton(self.btns[3])
HBox2.addWidget(self.btns[3])
if 'Waves/water' in noiseTypes:
self.btns[3].setChecked(True)
self.btns.append(QCheckBox('Insects'))
self.types.addButton(self.btns[4])
HBox2.addWidget(self.btns[4])
if 'Insects' in noiseTypes:
self.btns[4].setChecked(True)
self.btns.append(QCheckBox('People'))
self.types.addButton(self.btns[5])
HBox2.addWidget(self.btns[5])
if 'People' in noiseTypes:
self.btns[5].setChecked(True)
self.btns.append(QCheckBox('Other'))
self.types.addButton(self.btns[6])
HBox2.addWidget(self.btns[6])
if 'Other' in noiseTypes:
self.btns[6].setChecked(True)
Box = QHBoxLayout()
Box.setAlignment(Qt.AlignTop)
Box.addLayout(HBox1)
Box.addLayout(HBox2)
# Now put everything into the frame
self.setLayout(Box)
def getNoiseData(self):
if self.level.checkedButton() is None:
self.btnLow.setChecked(True)
types = []
for btn in self.btns:
if btn.isChecked():
types.append(btn.text())
return [self.level.checkedButton().text(),types]
#======
class Diagnostic(QDialog):
# Class for the diagnostic dialog box
def __init__(self, filters, parent=None):
QDialog.__init__(self, parent)
self.setWindowTitle('Diagnostic Plot Options')
self.setWindowIcon(QIcon('img/Avianz.ico'))
self.setMinimumWidth(300)
self.setWindowFlags((self.windowFlags() ^ Qt.WindowContextHelpButtonHint) | Qt.WindowCloseButtonHint)
# species / filter
self.filterLabel = QLabel("Select recogniser to use")
self.filter = QComboBox()
# add filter file names to combobox
self.filter.addItems(list(filters.keys()))
# antialiasing
self.aaLabel = QLabel("Select antialiasing type:")
self.aaGroup = QButtonGroup()
aaButtons = [QRadioButton("No AA"), QRadioButton("Fast partial AA"), QRadioButton("Full AA")]
aaButtons[0].setChecked(True)
for a in aaButtons:
self.aaGroup.addButton(a)
# spec or energy plot
# self.plotLabel = QLabel("Select plot type:")
# self.plotGroup = QButtonGroup()
# plotButtons = [QRadioButton("Filter band energy"), QRadioButton("Reconstructed spectrogram")]
# plotButtons[0].setChecked(True)
# for a in plotButtons:
# self.plotGroup.addButton(a)
# mark calls on spectrogram?
self.mark = QCheckBox("Mark calls on spectrogram")
self.mark.setChecked(True)
# buttons
self.activate = QPushButton("Make plots")
self.clear = QPushButton("Clear plots")
# layout
Box = QVBoxLayout()
Box.addWidget(self.filterLabel)
Box.addWidget(self.filter)
Box.addWidget(self.aaLabel)
for a in aaButtons:
Box.addWidget(a)
# Box.addWidget(self.plotLabel)
# for a in plotButtons:
# Box.addWidget(a)
Box.addWidget(self.mark)
Box.addWidget(self.activate)
Box.addWidget(self.clear)
# Now put everything into the frame
self.setLayout(Box)
def getValues(self):
return [self.filter.currentText(), self.aaGroup.checkedId(), self.mark.isChecked()]
class DiagnosticCNN(QDialog):
# Class for the diagnostic dialog box - CNN
def __init__(self, filters, parent=None):
QDialog.__init__(self, parent)
self.setWindowTitle('CNN Diagnostic Plot Options')
self.setWindowIcon(QIcon('img/Avianz.ico'))
self.setMinimumWidth(300)
self.setWindowFlags((self.windowFlags() ^ Qt.WindowContextHelpButtonHint) | Qt.WindowCloseButtonHint)
# species / filter
self.filterLabel = QLabel("Select recogniser to use")
self.filter = QComboBox()
# add filter file names to combobox
self.filter.addItems(list(filters.keys()))
# select call types to plot
self.ctbox = QHBoxLayout()
self.chkboxes = []
# buttons
self.activate = QPushButton("Make plots")
self.clear = QPushButton("Clear plots")
# layout
Box = QVBoxLayout()
Box.addWidget(self.filterLabel)
Box.addWidget(self.filter)
Box.addLayout(self.ctbox)
Box.addWidget(self.activate)
Box.addWidget(self.clear)
# Now put everything into the frame
self.setLayout(Box)
def getValues(self):
return [self.filter.currentText(), [cb.isChecked() for cb in self.chkboxes]]
#======
class Segmentation(QDialog):
# Class for the segmentation dialog box
# TODO: add the wavelet params
# TODO: work out how to return varying size of params, also process them
# TODO: test and play
def __init__(self, maxv, DOC=False, species=None, parent=None):
QDialog.__init__(self, parent)
self.setWindowTitle('Segmentation Options')
self.setWindowIcon(QIcon('img/Avianz.ico'))
self.setWindowFlags((self.windowFlags() ^ Qt.WindowContextHelpButtonHint) | Qt.WindowCloseButtonHint)
self.setMinimumWidth(350)
self.algs = QComboBox()
if DOC:
self.algs.addItems(["Wavelets", "FIR", "Median Clipping"])
else:
self.algs.addItems(["Default","Median Clipping","Fundamental Frequency","FIR","Wavelets","Harma","Power","Cross-Correlation"])
self.algs.currentIndexChanged[str].connect(self.changeBoxes)
self.undo = QPushButton("Undo")
self.activate = QPushButton("Segment")
#self.save = QPushButton("Save segments")
# Define the whole set of possible options for the dialog box here, just to have them together.
# Then hide and show them as required as the algorithm chosen changes.
# Spin box for amplitude threshold
self.ampThr = QDoubleSpinBox()
self.ampThr.setRange(0.001,maxv+0.001)
self.ampThr.setSingleStep(0.002)
self.ampThr.setDecimals(4)
self.ampThr.setValue(maxv+0.001)
self.HarmaThr1 = QSpinBox()
self.HarmaThr1.setRange(10,90)
self.HarmaThr1.setSingleStep(1)
self.HarmaThr1.setValue(10)
self.HarmaThr2 = QDoubleSpinBox()
self.HarmaThr2.setRange(0.1,0.95)
self.HarmaThr2.setSingleStep(0.05)
self.HarmaThr2.setDecimals(2)
self.HarmaThr2.setValue(0.9)
self.PowerThr = QDoubleSpinBox()
self.PowerThr.setRange(0.0,2.0)
self.PowerThr.setSingleStep(0.1)
self.PowerThr.setValue(1.0)
self.Fundminfreqlabel = QLabel("Min Frequency")
self.Fundminfreq = QLineEdit()
self.Fundminfreq.setText('100')
self.Fundminperiodslabel = QLabel("Min Number of periods")
self.Fundminperiods = QSpinBox()
self.Fundminperiods.setRange(1,10)
self.Fundminperiods.setValue(3)
self.Fundthrlabel = QLabel("Threshold")
self.Fundthr = QDoubleSpinBox()
self.Fundthr.setRange(0.1,1.0)
self.Fundthr.setDecimals(1)
self.Fundthr.setValue(0.5)
self.Fundwindowlabel = QLabel("Window size (will be rounded up as appropriate)")
self.Fundwindow = QSpinBox()
self.Fundwindow.setRange(300,5000)
self.Fundwindow.setSingleStep(500)
self.Fundwindow.setValue(1000)
self.medThr = QDoubleSpinBox()
self.medThr.setRange(0.2,6)
self.medThr.setSingleStep(1)
self.medThr.setDecimals(1)
self.medThr.setValue(3)
# set min seg size for median clipping
self.medSize = QSlider(Qt.Horizontal)
self.medSize.setTickPosition(QSlider.TicksBelow)
self.medSize.setTickInterval(100)
self.medSize.setRange(100,2000)
self.medSize.setSingleStep(100)
self.medSize.setValue(1000)
self.medSize.valueChanged.connect(self.medSizeChange)
self.medSizeText = QLabel("Minimum length: 1000 ms")
self.ecThr = QDoubleSpinBox()
self.ecThr.setRange(0.001,6)
self.ecThr.setSingleStep(1)
self.ecThr.setDecimals(3)
self.ecThr.setValue(1)
self.FIRThr1text = QLabel("Set threshold")
self.FIRThr1 = QDoubleSpinBox()
self.FIRThr1.setRange(0.0,2.0) #setRange(0.0,1.0)
self.FIRThr1.setSingleStep(0.05)
self.FIRThr1.setValue(0.1)
self.CCThr1 = QDoubleSpinBox()
self.CCThr1.setRange(0.0,2.0) #setRange(0.0,1.0)
self.CCThr1.setSingleStep(0.1)
self.CCThr1.setValue(0.4)
Box = QVBoxLayout()
Box.addWidget(self.algs)
# Labels
#self.amplabel = QLabel("Set threshold amplitude")
#Box.addWidget(self.amplabel)
self.Harmalabel = QLabel("Set decibel threshold")
Box.addWidget(self.Harmalabel)
#self.Onsetslabel = QLabel("Onsets: No parameters")
#Box.addWidget(self.Onsetslabel)
self.medlabel = QLabel("Set median threshold")
Box.addWidget(self.medlabel)
self.medlabel.show()
self.eclabel = QLabel("Set energy curve threshold")
Box.addWidget(self.eclabel)
self.ecthrtype = [QRadioButton("N standard deviations"), QRadioButton("Threshold")]
self.specieslabel = QLabel("Species")
self.species=QComboBox()
# extra hiding step - less widgets to draw on initial load
for w in range(Box.count()):
Box.itemAt(w).widget().hide()
self.specieslabel_cc = QLabel("Species")
self.species_cc = QComboBox()
self.species_cc.addItems(["Choose species...", "Bittern"])
spp = list(species.keys())
spp.insert(0, "Choose species...")
self.species.addItems(spp)
Box.addWidget(self.specieslabel)
Box.addWidget(self.species)
Box.addWidget(self.specieslabel_cc)
Box.addWidget(self.species_cc)
Box.addWidget(self.HarmaThr1)
Box.addWidget(self.HarmaThr2)
Box.addWidget(self.PowerThr)
Box.addWidget(self.medThr)
Box.addWidget(self.medSizeText)
Box.addWidget(self.medSize)
for i in range(len(self.ecthrtype)):
Box.addWidget(self.ecthrtype[i])
Box.addWidget(self.ecThr)
Box.addWidget(self.FIRThr1text)
Box.addWidget(self.FIRThr1)
Box.addWidget(self.Fundminfreqlabel)
Box.addWidget(self.Fundminfreq)
Box.addWidget(self.Fundminperiodslabel)
Box.addWidget(self.Fundminperiods)
Box.addWidget(self.Fundthrlabel)
Box.addWidget(self.Fundthr)
Box.addWidget(self.Fundwindowlabel)
Box.addWidget(self.Fundwindow)
Box.addWidget(self.CCThr1)
self.medSize = QSlider(Qt.Horizontal)
self.medSize.setTickPosition(QSlider.TicksBelow)
self.medSize.setTickInterval(100)
self.medSize.setRange(100,2000)
self.medSize.setSingleStep(100)
self.medSize.setValue(1000)
self.medSize.valueChanged.connect(self.medSizeChange)
# Sliders for minlen and maxgap are in ms scale
self.minlen = QSlider(Qt.Horizontal)
self.minlen.setTickPosition(QSlider.TicksBelow)
self.minlen.setTickInterval(0.25*1000)
self.minlen.setRange(0.25*1000, 10*1000)
self.minlen.setSingleStep(0.25*1000)
self.minlen.setValue(0.5*1000)
self.minlen.valueChanged.connect(self.minLenChange)
self.minlenlbl = QLabel("Minimum segment length: 0.5 sec")
self.maxgap = QSlider(Qt.Horizontal)
self.maxgap.setTickPosition(QSlider.TicksBelow)
self.maxgap.setTickInterval(0.25*1000)