- Bump roxygen2 version
- Update OpenGWAS API URL
- Checking for allowance depletion, and erroring until the allowance is reset
- Import the magrittr pipe (thanks @Bhashitha2014)
- Introducing JWT authorisation for the API
- Phasing out Google Oauth2 authorisation
- Added user() function to get user information
- Fixing issue with anonymous functions and backwards compatibility
- Bug in tophits when result is empty
- Removing version check at startup
- Bug in querying when errors returned
- Removing unnecessary dependencies and vignettes
- Reinstating https://api.opengwas.org/api/ as the API server address
- Fixing issues with tests failing when server load is an issue
- Updating API server address temporarily
- Modifying tests to manage API server load
- Fixes to load/attach behaviour
- Moving API address to https://api.opengwas.org/api/
- Fixing issues for CRAN release
- Added functions to write LD scores files into compressed
.gz
files for each super-population and divided by chromosomes. - Added argument to output gwasglue2 objects in
ieugwasr::tophits()
andieugwasr::associations()
.
- Adding messaging about package version
- Adding messaging about OpenGWAS
- Added options to perform LD functions on different super-populations
- Catching 503 error codes and retrying up to 5 times. This should help avoid fails when the server is busy.
- Bug fixes in clumping. Thanks to bethleegy for pointing this out
- Bug fixes in clumping
- Updated API address
- Fixed bug in ld_clump - wasn't doing all traits
- First release in conjunction with API
- Added a
NEWS.md
file to track changes to the package.