A high performance implementation of HDBSCAN clustering.

Biological foundation modeling from molecular to genome scale

ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit and hundreds of Google TPUs using Transformers Models.

A series of tutorial notebooks on denoising diffusion probabilistic models in PyTorch

A Python package for exploring and analysing genetic variation data

NeuralPLexer: State-specific protein-ligand complex structure prediction with a multi-scale deep generative model

Advanced Multilanguage Interface to CVODES and IDAS

Encoding MS/MS spectra using formula transformers for inferring molecular properties

Species-aware DNA language modeling

Species-aware DNA language models capture regulatory elements and their evolution

COmputational Pipeline for the Identification of CRISPR/Cas-facilitated intEgration Sites (CRISPR-COPIES)