🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

Fast genome and metagenome distance estimation using MinHash

GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more

Scalable Nucleotide Alignment Program -- a fast and accurate read aligner for high-throughput sequencing data

AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and protein sequence.

SortMeRNA: next-generation sequence filtering and alignment tool

A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.