Easy interactive web applications with R

A grammar of graphics for comparative genomics

NicheNet: predict active ligand-target links between interacting cells

High dimensional weighted gene co-expression network analysis

Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks

GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered polymorphisms in read sets using genome-graphs.

MetMiner: A user-friendly pipeline for large-scale plant metabolomics data analysis

Harmonized annotation of microbial physiology