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README.Rmd
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README.Rmd
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---
output: github_document
---
```{r, include = FALSE}
knitr::opts_chunk$set(
collapse = TRUE,
comment = "#>",
fig.path = "man/figures/README-",
out.width = "100%"
)
```
# Gemma API <img src='man/figures/logo.png' align="right" height="138" />
# gemmaAPI
<!-- badges: start -->
[![CRAN status](https://www.r-pkg.org/badges/version/gemmaAPI)](https://CRAN.R-project.org/package=gemmaAPI)
[![Lifecycle: stable](https://img.shields.io/badge/lifecycle-stable-brightgreen.svg)](https://www.tidyverse.org/lifecycle/#stable)
<!-- badges: end -->
This is an R wrapper for [Gemma](http://gemma.msl.ubc.ca)’s restful [API](https://gemma.msl.ubc.ca/resources/restapidocs/).
To cite Gemma, please use: [Lim, N. et al., Curation of over 10 000 transcriptomic studies to enable data reuse, Database, 2021.](https://doi.org/10.1093/database/baab006)
## Installation
You can install the released version of gemmaAPI from [CRAN](https://CRAN.R-project.org) with:
```{r, eval = FALSE}
install.packages("gemmaAPI")
```
And the development version from [GitHub](https://github.com/) with:
```{r, eval = FALSE}
# install.packages("devtools")
devtools::install_github("jsicherman/GemmAPI")
```
## Usage
For help on using the Gemma API wrapper, please see [the REST API docs](https://gemma.msl.ubc.ca/resources/restapidocs/) or the [vignette](vignettes/Usage.html).