diff --git a/INSTALL/BasicInstallInstructions.txt b/INSTALL/BasicInstallInstructions.txt deleted file mode 100644 index 089df55..0000000 --- a/INSTALL/BasicInstallInstructions.txt +++ /dev/null @@ -1,88 +0,0 @@ - -# Lynch -# Coming up with a decent set of reqs has been a problem because of including ADRAS code. -# - -########## -# 1) Install conda on your system -export PATH=~/.local/bin:$PATH - -# 1) Build the environment -conda create --name myenv -y python=3.7.3 -conda activate myenv - -conda install -y cartopy=0.17.0 -conda install -y basemap=1.2.0 -conda install -y netCDF4=1.4.2 -conda install -y matplotlib=3.0.3 -conda install -y numpy -conda install -y pandas -conda install -y scipy -conda install -y xarray -conda install -y geopandas -conda install -y pyyaml -conda install -y seaborn - -# PIP stuff # Some stuff cannot be found using conda -pip install rasterio==1.1.8 # Needs to be upgraded -pip install cdsapi==0.3.0 -pip install PyKrige==1.4.0 -pip install datedelta==1.3 -pip install siphon - -# 2) Install the local noaa-coops - -git clone https://github.com/GClunies/noaa_coops.git -cd noaa_coops -python setup.py install --user - -# 3) Get the ADCSupportTools code code -git clone https://github.com/jtilson/ADCIRCSupportTools.git - -# 4) Runs some examples manually - -##### -export PYTHONPATH=/projects/sequence_analysis/vol1/prediction_work/CRAP/ADCIRCSupportTools -export RUNTIMEDIR=./TEST - -# 4) Test runs -##scikit-learn xarray basemap matplotlib numpy pandas matplotlib netCDF4 pyyaml scipy cartopy gdal rasterio geopandas -export PYTHONPATH=./ADCIRCSupportTools -export PYTHONPATH=/projects/sequence_analysis/vol1/prediction_work/HATTERAS/ADCIRCSupportTools -export RUNTIMEDIR="." - -# 4a) test the OBS codes -# Installs files into $RUNTIMEDIR/StationTest -python ../GetObsStations.py --timein='2020-10-17 12:00' --timeout='2020-10-21 18:00' - -# 4b) get_adcirc test - -# 4c) computeError -export dir="../TEST_DATA/ADCIRC/" -python ../computeErrorField.py --obsmeta "$dir/obs_wl_metadata.pkl" --obsdata "$dir/obs_wl_smoothed.pkl" --adcdata "$dir/adc_wl.pkl" - -# 4d) Kriging test -python test_CVkriging.py --errorfile '/projects/sequence_analysis/vol1/prediction_work/HATTERAS/ADCIRCSupportTools/TEST_DATA/ADCIRC/stationSummaryAves_manualtest.csv' --gridjsonfile '/projects/sequence_analysis/vol1/prediction_work/HATTERAS/ADCIRCSupportTools/TEST_DATA/ADCIRC/adc_coord.json' --clampfile '/projects/sequence_analysis/vol1/prediction_work/HATTERAS/ADCIRCSupportTools/config/clamp_list_hsofs.dat' --subdir_name 'TESTINT' --iometadata 'IOMETA' - -# 4e) pipeline test -python execute_APSVIZ_pipeline.py --iosubdir TESTDIR --urljson data_test.json - -# 5) CDS/OWI testing -# 5a) Fetch a month from CDS -export year='2018' -export month='01' -python -u ../cds_request.py --year $year --month $month - -# 5b) Convert a month to OWI. Uses data from the TDS directory (EDS research) /projects/ees/TDS/ERA5/global - -mkdir TEMP -python -u ../era5_to_owi.py --metafilename "test" --metadirname "2018" --convertEastWest --ddir "/projects/ees/TDS/ERA5/global" --odir "./TEMP" --date_start "201801" --date_end "201803" - -# 6) ADDA pipeline. Modern variant of the original and fully backward compatible. -# 6a) Straight up ADDA run -python -u ./ADDA_withCLI.py --override_repeats - -# 6b) AN ADDA run with CV optimizastion of the kriging params (lengthy execution time) -python -u ADDA_CVcollect.py --cv_kriging --override_repeats --time2 20200811-00:00:00 - -conda deactivat diff --git a/INSTALL/conda_requirements.txt b/INSTALL/conda_requirements.txt deleted file mode 100644 index aba3c3c..0000000 --- a/INSTALL/conda_requirements.txt +++ /dev/null @@ -1,13 +0,0 @@ -cartopy=0.17.0 -basemap=1.2.0 -cftime=1.0.3.4 -netCDF4=1.4.2 -matplotlib=3.0.3 -pandas=1.1.3 -numpy=1.19.4 -scipy=1.5.2 -xarray=0.14.1 -scikit-learn=0.20.3 -joblib=0.14.1 -pyyaml -seaborn diff --git a/INSTALL/pip_requirements.txt b/INSTALL/pip_requirements.txt deleted file mode 100644 index a364721..0000000 --- a/INSTALL/pip_requirements.txt +++ /dev/null @@ -1,5 +0,0 @@ -rasterio==1.1.8 -cdsapi==0.3.0 -PyKrige==1.5.1 -datedelta==1.3 -siphon