2023-02-16-Project-Summary---Coral-E5.md

layout	title	date	tags	categories
post	Project Summary - Coral E5	2023-02-16 10:52	E5 project summary coral	Project Summary E5

C.goreaui

C.goreaui GFF to GTF

• Notebook:

  • https://robertslab.github.io/sams-notebook/2023/02/17/Data-Wrangling-C.goreaui-Genome-GFF-to-GTF-Using-gffread.html

• Output directory:

  • https://gannet.fish.washington.edu/Atumefaciens/20230217-cgor-gff_to_gtf/

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M.capitata

M.capitata

• Notebook:

• Output directory:

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P.acuta

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P.grandis

P.grandis SRA Data Retrieval, Trimming, and QC

• Notebook:

  • https://robertslab.github.io/sams-notebook/2023/01/13/SRA-Data-Coral-SRA-BioProject-PRJNA744403-Download-and-QC.html

• Output directory:

  • https://gannet.fish.washington.edu/Atumefaciens/20230119-coral-fastqc-fastp-multiqc-PRJNA744403/data/P_grandis/

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P.meandrina

• Notebook:

  • https://robertslab.github.io/sams-notebook/2023/01/13/SRA-Data-Coral-SRA-BioProject-PRJNA744403-Download-and-QC.html

• Output directory:

  • https://gannet.fish.washington.edu/Atumefaciens/20230119-coral-fastqc-fastp-multiqc-PRJNA744403/data/P_meandrina/

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P.verrucosa

P.verrucosa RNA-seq Trimming and QC

• Notebook:

  • https://robertslab.github.io/sams-notebook/2023/02/15/FastQ-Trimming-and-QC-P.verrucosa-RNA-seq-Data-from-Danielle-Becker-in-Hollie-Putnam-Lab-Using-fastp-FastQC-and-MultiQC-on-Mox.html

• Output directory:

  • https://gannet.fish.washington.edu/Atumefaciens/hputnam-Becker_E5/

P.verrucosa Data Received

• Notebook:

  • https://robertslab.github.io/sams-notebook/2023/02/10/Data-Received-P.verrucosa-RNA-seq-and-WGBS-Full-Data-from-Danielle-Becker.html

• Output directory:

P.verrucosa GFF to GTF Conversion

• Notebook:

  • https://robertslab.github.io/sams-notebook/2023/01/27/Data-Wrangling-P.verrucosa-Genome-GFF-to-GTF-Using-gffread.html

• Output directory:

HiSat2 Genome Indexing Pver_genome_assembly_v1.0.fasta

• Notebook:

  • https://robertslab.github.io/sams-notebook/2023/01/31/Genome-Indexing-P.verrucosa-v1.0-Assembly-with-HiSat2-on-Mox.html

• Output directory: