Commits

Commits on Oct 16, 2023

Merge pull request AlphaGenes#13 from AlphaGenes/devel
gregorgorjanc
authoredOct 16, 2023
Added CHANGELOG.md
gregorgorjanc
authoredOct 16, 2023
Bugfix - founder mistake in Pedigree.py AlphaGenes#12
gregorgorjanc
authoredOct 16, 2023

Commits on Oct 9, 2023

Fixing outputkey for writekey
gregorgorjanc
authoredOct 9, 2023

Commits on Aug 17, 2023

Merge pull request AlphaGenes#10 from AudreyAAMartin/main
gregorgorjanc
authoredAug 17, 2023

Commits on Aug 9, 2023

Update Pedigree.py
AudreyAAMartin
authoredAug 9, 2023

Commits on Jul 17, 2023

Merge pull request AlphaGenes#6 from XingerTang/main
gregorgorjanc
authoredJul 17, 2023

Commits on Jul 13, 2023

Merge pull request AlphaGenes#4 from XingerTang/devel
gregorgorjanc
authoredJul 13, 2023

Commits on Jul 11, 2023

Revert the change of writePhase()
XingerTang
committedJul 11, 2023

Commits on Jun 23, 2023

Merge pull request AlphaGenes#2 from XingerTang/main
gregorgorjanc
authoredJun 23, 2023
delete a line
XingerTang
committedJun 23, 2023
Add -help argument
XingerTang
committedJun 23, 2023

Commits on Jun 22, 2023

Modify InputOutput.py
XingerTang
committedJun 22, 2023

Commits on Jan 17, 2023

Updating .gitignore
gregorgorjanc
committedJan 17, 2023
jitclass is in numba.experimental
gregorgorjanc
committedJan 17, 2023

Commits on Sep 20, 2021

The same way of loading numba.experimentl (via try)
gregorgorjanc
committedSep 20, 2021

Commits on Sep 19, 2021

Fixing issues due to numba.experimental
gregorgorjanc
committedSep 19, 2021

Commits on Sep 29, 2020

slightly tweaking the formating for io
WHALEN Andrew
committedSep 29, 2020
Tweaking boiler plate info
WHALEN Andrew
committedSep 29, 2020

Commits on Sep 15, 2020

Fix even loci bug
sthorn
committedSep 15, 2020

Commits on Sep 9, 2020

Remove .bim reader/writer
sthorn
committedSep 9, 2020
Fix allele coding bug
sthorn
committedSep 9, 2020
Fixing monallelic loci warning; add diagnostic msgs
sthorn
committedSep 9, 2020

Commits on Sep 4, 2020

Add defaults for startsnp and stopsnp options
sthorn
committedSep 4, 2020

Commits on Sep 3, 2020

Change AlphaImpute format to AlphaGenes
sthorn
committedSep 3, 2020

Commits on Aug 30, 2020

Fix library writing for -haploid
sthorn
committedAug 30, 2020
Change exceptions to prints + sys/exit()
sthorn
committedAug 30, 2020

Commits on Aug 29, 2020

Remove diagnostic msg
sthorn
committedAug 29, 2020
Add get_coding option to .ped reader
sthorn
committedAug 29, 2020
Remove print from writeLines(); fix typo
sthorn
committedAug 29, 2020

Commits on Aug 28, 2020

Remove commented code
sthorn
committedAug 28, 2020

Commits on Aug 26, 2020

Add sample_only_identifiers()
sthorn
committedAug 26, 2020

Commits on Aug 25, 2020

Add PlantImputeIndividual
sthorn
committedAug 25, 2020
Remove HaplotypeLibrary.py.load() and save()
sthorn
committedAug 25, 2020
Minor updates of comments, checks, names
sthorn
committedAug 25, 2020