index.rst

Documentation for COBRApy

For installation instructions, please see INSTALL.rst.

Many of the examples below are viewable as IPython notebooks, which can be viewed at nbviewer.

.. toctree::
    :numbered:
    :maxdepth: 2

    getting_started
    configuration
    building_model
    io
    simulating
    deletions
    phenotype_phase_plane
    sampling
    loopless
    consistency
    gapfilling
    media
    solvers
    constraints_objectives
    dfba
    pymatbridge
    faq
    _autogen/modules

Indices and tables

• :ref:`genindex`
• :ref:`modindex`
• :ref:`search`