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Database used for running kraken2 #84

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foreignsand opened this issue Jul 9, 2024 · 0 comments
Open

Database used for running kraken2 #84

foreignsand opened this issue Jul 9, 2024 · 0 comments

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@foreignsand
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In your VGP_decontamination directory, the RELEASE_THE_KRAKEN3.sh script references a database called 'standard_plus_db'. It looks like this would be the standard kraken2 database with some additional data. I'm interested to know what data were used to create this database.

Many thanks!

Cheers,
Emily
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@foreignsand