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gender prediction #10

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kaichop opened this issue Jul 20, 2016 · 1 comment
Closed

gender prediction #10

kaichop opened this issue Jul 20, 2016 · 1 comment

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@kaichop
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kaichop commented Jul 20, 2016

Given a list of samples, some of which have unknown gender, it should predict gender automatically and produce calls for all samples.
@kaichop
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kaichop commented Jan 4, 2018

If sex for a sample is not provided in sexfile, or if --sexfile is not specified, PennCNV will try to predict the gender of the sample, based on BAF heterozgous rate (fraction of chrX markers with BAF between 0.25 and 0.75) of >0.1 (female) or <0.1 (male).

@kaichop kaichop closed this as completed Jan 4, 2018
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