PFB - PLINK

[JFsanchezherrero]

Hi @kaichop,

I was wondering if it would be ok to use PFB values generated for each SNP of interest using PLINK to calculate the B Allele frequency or is it mandatory to use compile_pb.pl script.

Thanks in advance,
Jose

[kaichop]

Unless you know which allele is the "B" allele for each SNP, this will not work correctly.

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On Tue, Dec 1, 2020 at 6:24 AM Jose Francisco Sanchez-Herrero < ***@***.***> wrote: Hi @kaichop <https://github.com/kaichop>, I was wondering if it would be ok to use PFB values generated for each SNP of interest using PLINK to calculate the B Allele frequency or is it mandatory to use compile_pb.pl script. Thanks in advance, Jose — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub <#62>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/ABNG3OH7MENQEVZ6LIBIX33SSTG6PANCNFSM4UI4Q34A> .

[JFsanchezherrero]

Great!
Thanks!!

Best regards