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environment.yml
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environment.yml
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name: DEMINING_env
channels:
- bioconda
- conda-forge
- https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda/
- https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge/
- defaults
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_gnu
- _tflow_select=2.3.0=mkl
- absl-py=1.4.0=pyhd8ed1ab_0
- astor=0.8.1=pyh9f0ad1d_0
- astunparse=1.6.3=pyhd8ed1ab_0
- bcftools=1.9=h68d8f2e_9
- bedtools=2.27.1=hdcf5f25_8
- blinker=1.5=pyhd8ed1ab_0
- bwa=0.7.12=1
- bzip2=1.0.8=h7f98852_4
- c-ares=1.19.1=hd590300_0
- ca-certificates=2023.7.22=hbcca054_0
- cachetools=2.1.0=py_0
- cffi=1.14.4=py36h211aa47_0
- click=8.0.1=py36h5fab9bb_0
- cryptography=35.0.0=py36hb60f036_0
- curl=7.87.0=h6312ad2_0
- dataclasses=0.8=pyh787bdff_2
- gast=0.3.3=py_0
- gatk4=4.1.2.0=1
- google-auth=1.2.1=py_0
- google-auth-oauthlib=0.4.1=py_2
- google-pasta=0.2.0=pyh8c360ce_0
- grpcio=1.38.1=py36h8e87921_0
- gsl=2.5=h294904e_1
- h5py=2.10.0=nompi_py36h4510012_106
- hdf5=1.10.6=nompi_h6a2412b_1114
- hisat2=2.1.0=py36hc9558a2_4
- htslib=1.9=h244ad75_9
- importlib-metadata=4.8.1=py36h5fab9bb_0
- java-jdk=8.0.92=1
- keras-preprocessing=1.1.2=pyhd8ed1ab_0
- keyutils=1.6.1=h166bdaf_0
- krb5=1.20.1=hf9c8cef_0
- ld_impl_linux-64=2.40=h41732ed_0
- libblas=3.9.0=17_linux64_openblas
- libcblas=3.9.0=17_linux64_openblas
- libcurl=7.87.0=h6312ad2_0
- libdeflate=1.7=h7f98852_5
- libedit=3.1.20191231=h46ee950_2
- libev=4.33=h516909a_1
- libffi=3.2.1=he1b5a44_1007
- libgcc-ng=13.1.0=he5830b7_0
- libgfortran-ng=13.1.0=h69a702a_0
- libgfortran5=13.1.0=h15d22d2_0
- libgomp=13.1.0=he5830b7_0
- liblapack=3.9.0=17_linux64_openblas
- libnghttp2=1.51.0=hdcd2b5c_0
- libnsl=2.0.0=h7f98852_0
- libopenblas=0.3.23=pthreads_h80387f5_0
- libprotobuf=3.18.0=h780b84a_1
- libssh2=1.10.0=haa6b8db_3
- libstdcxx-ng=13.1.0=hfd8a6a1_0
- libzlib=1.2.13=hd590300_5
- markdown=3.4.4=pyhd8ed1ab_0
- ncurses=6.1=hf484d3e_1002
- numpy=1.19.5=py36hfc0c790_2
- oauthlib=3.2.2=pyhd8ed1ab_0
- openjdk=8.0.332=h166bdaf_0
- openssl=1.1.1u=hd590300_0
- opt_einsum=3.3.0=pyhd8ed1ab_1
- pandas=1.1.5=py36h284efc9_0
- perl=5.32.1=4_hd590300_perl5
- picard=2.7.1=py36_2
- pip=21.3.1=pyhd8ed1ab_0
- protobuf=3.18.0=py36hc4f0c31_0
- pyasn1=0.4.8=py_0
- pyasn1-modules=0.0.5=py36_0
- pycparser=2.21=pyhd8ed1ab_0
- pyjwt=2.8.0=pyhd8ed1ab_0
- pysam=0.15.2=py36h02877da_7
- python=3.6.10=h8356626_1011_cpython
- python-dateutil=2.8.2=pyhd8ed1ab_0
- python_abi=3.6=2_cp36m
- pytz=2023.3=pyhd8ed1ab_0
- readline=8.0=h46ee950_1
- requests=2.13.0=py36_0
- requests-oauthlib=1.3.1=pyhd8ed1ab_0
- rsa=3.1.4=py36_0
- samtools=1.9=h10a08f8_12
- scipy=1.5.3=py36h81d768a_1
- seqtk=1.4=he4a0461_1
- setuptools=58.0.4=py36h5fab9bb_2
- six=1.16.0=pyh6c4a22f_0
- sqlite=3.32.3=hcee41ef_1
- tensorboard=2.3.0=py_0
- tensorboard-plugin-wit=1.8.1=pyhd8ed1ab_0
- tensorflow=2.2.0=mkl_py36h5a57954_0
- tensorflow-base=2.2.0=mkl_py36hd506778_0
- tensorflow-estimator=2.6.0=py36hc4f0c31_0
- termcolor=1.1.0=pyhd8ed1ab_3
- tk=8.6.12=h27826a3_0
- typing_extensions=4.1.1=pyha770c72_0
- werkzeug=2.0.2=pyhd8ed1ab_0
- wheel=0.37.1=pyhd8ed1ab_0
- wrapt=1.13.1=py36h8f6f2f9_0
- xz=5.2.6=h166bdaf_0
- zipp=3.6.0=pyhd8ed1ab_0
- zlib=1.2.13=hd590300_5
prefix: ~/DEMINING_env