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32 stars written in Python
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Magnificent app which corrects your previous console command.

Python 89,143 3,573 Updated Jul 19, 2024

🎨 Diagram as Code for prototyping cloud system architectures

Python 40,107 2,568 Updated Jan 13, 2025

What the f*ck Python? 😱

Python 35,960 2,663 Updated Nov 26, 2024

Luigi is a Python module that helps you build complex pipelines of batch jobs. It handles dependency resolution, workflow management, visualization etc. It also comes with Hadoop support built in.

Python 18,019 2,404 Updated Jan 15, 2025

A Python library for the Docker Engine API

Python 6,881 1,675 Updated Nov 18, 2024

🕵 Artificial Intelligence for social control of public administration | **This repository does not receive frequent updates. Check out the README**

Python 4,529 661 Updated Jan 31, 2024

A Python module for creating Excel XLSX files.

Python 3,689 638 Updated Jan 1, 2025

Converts profiling output to a dot graph.

Python 3,259 392 Updated Nov 22, 2024

Data intensive science for everyone.

Python 1,439 1,015 Updated Jan 13, 2025

Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis

Python 994 353 Updated Aug 24, 2024

Sublime plugin to prefix your CSS

Python 666 75 Updated May 14, 2024

Efficient pythonic random access to fasta subsequences

Python 465 75 Updated Oct 14, 2024

A Variant Call Format reader for Python.

Python 409 199 Updated Sep 22, 2023

An ensemble approach to accurately detect somatic mutations using SomaticSeq

Python 196 53 Updated Jan 11, 2025

FASTQ sequence quality visualisation with Emoji

Python 170 17 Updated Nov 19, 2024

Command-line utilities to assist in developing Galaxy and Common Workflow Language artifacts - including tools, workflows, and training materials.

Python 91 86 Updated Oct 29, 2024

DEPRECATED. This tool has been superseded by https://github.com/griffithlab/pVACtools

Python 61 46 Updated Apr 16, 2019

Exome/Capture/RNASeq Pipeline Implementation using snakemake

Python 45 18 Updated Mar 26, 2018

Sample search by metadata and features

Python 45 20 Updated Aug 31, 2023

Python-based framework for computational immunomics

Python 40 29 Updated Jul 7, 2021

Distributed job execution application built for Galaxy

Python 38 50 Updated Jan 13, 2025

Easily create and manage compute clusters on any Cloud.

Python 37 23 Updated Nov 23, 2024

Translation layer between the GDC Data Dictionary and psqlgraph

Python 28 3 Updated Mar 22, 2024

transparently build CWL and Galaxy XML tool definitions for any script that uses argparse

Python 26 10 Updated Nov 5, 2024

General procedure for making QIIME 2 compatible SILVA reference files

Python 20 14 Updated Oct 3, 2024

VCF Observer is a VCF file analysis, comparison, and visualization tool.

Python 15 1 Updated Jan 3, 2025

Galaxy process management and system administration tools

Python 13 17 Updated Jan 2, 2025

Filters for Next Generation Sequencing

Python 11 Updated Oct 31, 2024

StackStorm packs to automate sequencing center operations

Python 9 20 Updated Dec 6, 2022

small example on how to get started with documentation with sphinx

Python 6 7 Updated Apr 22, 2014
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