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Starred repositories

27 stars written in Jupyter Notebook
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A latent text-to-image diffusion model

Jupyter Notebook 70,714 10,444 Updated Jun 18, 2024

Learn how to design, develop, deploy and iterate on production-grade ML applications.

Jupyter Notebook 38,613 6,126 Updated Aug 18, 2024

Grounded SAM: Marrying Grounding DINO with Segment Anything & Stable Diffusion & Recognize Anything - Automatically Detect , Segment and Generate Anything

Jupyter Notebook 16,348 1,493 Updated Sep 5, 2024

Image restoration with neural networks but without learning.

Jupyter Notebook 7,998 1,434 Updated Apr 27, 2023

https://www.youtube.com/channel/UC34rW-HtPJulxr5wp2Xa04w?sub_confirmation=1

Jupyter Notebook 4,202 2,473 Updated May 21, 2025

Collection of useful data science topics along with articles, videos, and code

Jupyter Notebook 4,095 1,031 Updated May 22, 2025

Segment Anything for Microscopy

Jupyter Notebook 547 69 Updated May 23, 2025

Respository for Open-Science modular microscope system.

Jupyter Notebook 495 72 Updated May 22, 2025

GPU-accelerated bio-image analysis focusing on 3D+t microscopy image data

Jupyter Notebook 226 49 Updated Feb 21, 2025

Lecture materials "Bio-image analysis, biostatistics, programming and machine learning for computational biology" at the Center of Molecular and Cellular Bioengineering (CMCB) / University of Techn…

Jupyter Notebook 209 49 Updated Sep 11, 2023

Open source Python library for building bioimage analysis pipelines

Jupyter Notebook 169 33 Updated May 22, 2025

🛣 Building an end-to-end Promptable Semantic Segmentation (Computer Vision) project from training to inferencing a model on LandCover.ai data (Satellite Imagery).

Jupyter Notebook 145 25 Updated May 15, 2025

A napari plugin for direct 3D cell segmentation -- taking you through training, inference, and review of masks

Jupyter Notebook 82 14 Updated Mar 24, 2025

an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.

Jupyter Notebook 69 13 Updated May 13, 2025

SplineDist: Automated Cell Segmentation with Spline Curves

Jupyter Notebook 67 15 Updated Sep 29, 2024

Code accompanying our manuscript "Coordinated cellular neighborhoods orchestrate antitumoral immunity at the colorectal cancer invasive front"

Jupyter Notebook 57 18 Updated Nov 4, 2024

NuCLS: A scalable crowdsourcing, deep learning approach and dataset for nucleus classification, localization and segmentation

Jupyter Notebook 54 13 Updated Apr 4, 2022

Your Personal Assistant in Computational Bioimaging.

Jupyter Notebook 41 12 Updated Mar 28, 2025

A neural network software for using Molecular labelling to improve pathological annotation of H and E tissues

Jupyter Notebook 31 7 Updated Jan 29, 2025
Jupyter Notebook 25 14 Updated Aug 27, 2020

Create web-based OME-Zarr galleries

Jupyter Notebook 17 Updated May 5, 2025

The Detectron 2 MaskRCNN implementation for the PanNuke Dataset (https://jgamper.github.io/PanNukeDataset/).

Jupyter Notebook 13 1 Updated Jun 25, 2021
Jupyter Notebook 11 2 Updated Oct 10, 2023
Jupyter Notebook 7 1 Updated May 10, 2025

Vectra Imaging Quality Control and Processing Pipeline

Jupyter Notebook 5 2 Updated Sep 16, 2021
Jupyter Notebook 4 1 Updated May 23, 2022