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Commits on Sep 21, 2016

• Set canuIteration to 1, not 0, on task completion. Non-grid runs were failing to stop on failures. Seems to work for both grid and non-grid now.

  brianwalenz

  committed
  4816395

• Move read bookkeeping from Unitig (as static) to TigVector (as private).

  brianwalenz

  committed
  6a64141

• Fix incorrect pragma for parallel initialization of work area.

  brianwalenz

  committed
  12e7f25

• STOP complaining about dangling else.

  brianwalenz

  committed
  b6885c7

• Fix boring printf() formatting warnings.

  brianwalenz

  committed
  71d827e

Commits on Sep 20, 2016

• Update index.rst

  skoren

  authored
  3de8acd

• Update index.rst

  skoren

  authored
  0cd4167

Commits on Sep 16, 2016

• Fix for PBSPro failing with '=1: command not found'. Issue marbl#246.

  brianwalenz

  committed
  85f55f6

• Increase OEA memory if jobs are small. Issue marbl#179.

  brianwalenz

  committed
  2265304

• Remove newline from error message.

  brianwalenz

  committed
  7870f75

• For 'blobs', use direct file access instead of a memory mapped file.

  brianwalenz

  committed
  e636ff7

• Switch overlapInCore to OpenMP from pthreads.

  brianwalenz

  committed
  00a4e1b

• Switch meryl to OpenMP from pthreads.

  brianwalenz

  committed
  20123b2

• Add one byte of innocent whitespace.

  brianwalenz

  committed
  9978fcc

• Remove obsolete HTML output.

  brianwalenz

  committed
  28f56f5

• Remove the unused PacBio and Nanopore specific data storage.

  brianwalenz

  committed
  216b39c

• Remove a few fixes for older gkpStore QV handling.

  brianwalenz

  committed
  1d80705

• Add a spiffy hex dump function.

  brianwalenz

  committed
  222eee3

Commits on Sep 9, 2016

• Simple test driver for mt19937ar.

  brianwalenz

  committed
  059e4ce

• Write globalScores to temporary file, and rename when complete.

  brianwalenz

  committed
  ce77820

• Add comments.

  brianwalenz

  committed
  d9d1df4

• Add comments.

  brianwalenz

  committed
  c5df7cb

• Write outputs to temporary files, then rename when complete.

  brianwalenz

  committed
  befadd2

• Write configuration output to a WORKING file, then rename when finished.

  brianwalenz

  committed
  807a335

• Add an 'importer' that generates random overlaps.

  brianwalenz

  committed
  0801401

• Add mtRandomExponential().

  brianwalenz

  committed
  3b526ea

• Don't use the maximum number of processes when configuring, and report failures better. Issue marbl#250.

  brianwalenz

  committed
  7cbe266

Commits on Sep 6, 2016

• Fix dump from gatekeeper

  skoren

  committed
  4f6f0fd

Commits on Sep 2, 2016

• Don't gzip compress snappy compressed ovb files.

  brianwalenz

  committed
  71dcf22

• Don't let PBS/Torque or PBSPro split array jobs into multiple submissions. Issue marbl#246.

  brianwalenz

  committed
  e7e78b4

• Use PBS_ARRAY_INDEX to get the job number, not PBS_ARRAY_ID. Issue marbl#246.

  brianwalenz

  committed
  be3b612

• Don't wipe out the name for single-element arrays. Issue marbl#246.

  brianwalenz

  committed
  b22aaff

Commits on Sep 1, 2016

• Fix issues with older gnuplot versions.

  brianwalenz

  committed
  ee7b32a

• Add gridEngine=PBSPro. Issues marbl#166 and marbl#246.

  brianwalenz

  committed
  198db09

Commits on Aug 31, 2016

• Actually _use_ the new gnuplot configuration. Issue marbl#218.

  brianwalenz

  committed
  a2951ae

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