De novo assembly from Oxford Nanopore reads.

Links to all data science, genomics, and other notes

Identify non-B forming motifs

Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs

displays multiple genomic sequences in the form of a tube map

a Bioinformatics Application for Navigating De novo Assembly Graphs Easily

Official home of genome aligner based upon notion of Cactus graphs

Deep statistical model for predicting non-B DNA structures from ONT sequencing

Sequence-to-graph mapper and graph generator

tools for working with genome variation graphs

A curated list of awesome Bioinformatics libraries and software.

Methylation/modified base calling separated from basecalling.

Oxford Nanopore's Basecaller

Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.

𝐠𝐠𝐯𝐨𝐥𝐜 effortlessly translates differential expression datasets and RNAseq data into informative volcano plots. Highlight genes of interest with unprecedented ease. With just a single line of code,…

Cell types enrichment analysis

genes and genomes at your fingertips

The Composer of ggplots

A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

All header files from numerical recipes. 3rd Edition.

SPAdes Genome Assembler