TODO for ReMixT

General

Rename

Benchmarking

Use real data (in seqdata format) to generate simulated genomes with real reads

Refactor

Rank solutions by BIC or similar to discern solutions with different numbers of clones
Output all solutions in some easy to navigate directory structure

Algorithm

Learn parameters based on large amounts of real data
Revisit parameter settings
Mixing proportion output as DNA proportion and also cell proportion