diff --git a/fastmap.c b/fastmap.c index 15f0aa42..be7ba0ef 100644 --- a/fastmap.c +++ b/fastmap.c @@ -319,7 +319,7 @@ int main_mem(int argc, char *argv[]) fprintf(stderr, " specify the mean, standard deviation (10%% of the mean if absent), max\n"); fprintf(stderr, " (4 sigma from the mean if absent) and min of the insert size distribution.\n"); fprintf(stderr, " FR orientation only. [inferred]\n"); - fprintf(stderr, " -u output XB instead of XA; XB is XA with the alignment score added.\n"); + fprintf(stderr, " -u output XB instead of XA; XB is XA with the alignment score and mapping quality added.\n"); fprintf(stderr, "\n"); fprintf(stderr, "Note: Please read the man page for detailed description of the command line and options.\n"); fprintf(stderr, "\n");