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README.html
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<title>README</title>
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<h1 id="advanced-biological-statistics-part-ii-winter-2018">Advanced Biological Statistics, Part II: Winter 2018</h1>
<p>You probably want to look at these pages on <a href="https://petrelharp.github.io/bio_610B/">github pages</a>, <strong>not</strong> by browsing the files above. Quick links:</p>
<ul>
<li><a href="https://petrelharp.github.io/bio_610B/syllabus.html">course syllabus</a></li>
<li><a href="https://petrelharp.github.io/bio_610B/schedule.html">schedule</a>, including links to slides and homeworks.</li>
</ul>
<h2 id="useful-references-and-links">Useful references and links</h2>
<h3 id="stan">Stan</h3>
<ul>
<li><p><a href="https://github.com/stan-dev/example-models">Example models in Stan</a>: each contains a Stan program, code for simulating data, real data, and model output and diagnostics</p></li>
<li><p>Vignette on <a href="https://cran.r-project.org/web/packages/rstan/vignettes/stanfit-objects.html">stanfit objects</a></p></li>
<li><p>Brief guide to <a href="http://mc-stan.org/misc/warnings">Stan’s warnings</a></p></li>
</ul>
<h3 id="tidyverse">tidyverse</h3>
<ul>
<li><a href="http://ggplot2.tidyverse.org/reference/">ggplot2 quick reference</a></li>
</ul>
<h3 id="miscellanea">Miscellanea</h3>
<ul>
<li>How to <a href="https://stackoverflow.com/questions/19226816/how-can-i-view-the-source-code-for-a-function/19226817#19226817">print the source code</a> for functions that don’t show it to you when you type their names. (tldr; <code>showMethods(fun); getMethod(fun, c(x='class1', y='class2'))</code>)</li>
</ul>
<h3 id="rstudio">Rstudio</h3>
<ul>
<li>Strongly recommended global configuration: [media/rstudio_config_1.png]</li>
</ul>
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</html>