Name		Name	Last commit message	Last commit date
parent directory ..
README.md		README.md
amp-evidence-proteins.fa		amp-evidence-proteins.fa
amp-evidence-transcripts2.fa		amp-evidence-transcripts2.fa
amp-seeds-150116.fa		amp-seeds-150116.fa
bullfrog-v3-masked-GMAPhitScaffolds.all.maker.proteins.fasta		bullfrog-v3-masked-GMAPhitScaffolds.all.maker.proteins.fasta
chopper.py		chopper.py
digested-sequences-filtered.fa		digested-sequences-filtered.fa
filter_valid_seq.py		filter_valid_seq.py

README.md

Additional files for AMP discovery pipeline

This folder includes additional files for the AMP discovery pipeline that has been utilized to mine novel AMPs from the bullfrog genome.

chopper.py - script for in silico enzymatic cleavage of AMP precursors
filter_valid_seq.py - script for invalid sequence removal
amp-seeds-150116.fa - 1,171 AMP precursor cDNA sequences for GMAP
amp-evidence-proteins.fa - AMP protein evidence for MAKER2
amp-evidence-transcripts2.fa - AMP transcript evidence for MAKER2
bullfrog-v3-masked-GMAPhitScaffolds.all.maker.proteins.fasta - 449 candidate AMP precursors