v2.2.5

BugFixes

#188 Allow numeric values for JSON annotations file strand values
Features

#188 Add option to include non-coding transcripts in the annotations file

v2.2.4

Bugfixes:

#185 #186 Fixing OpenBlas issue by explicitly setting the number of threads when numpy is imported.

v2.2.3

Bugfixes

#182 #183 Fixing README.md so it can be converted to rst and displayed in PyPI nicely.

v2.2.2

Bugfixes

#179 Making the outputs more consistent across multiple runs.

v2.2.1

Bugfixes

#175 Adjusting qstat command so that the output is in the expected format

v2.2.0

Improvements:

#165 Adding reference and alt calculator as a utility script
#171 Adding STAR-Fusion as a supported tool

v2.1.7

Improvements:

• #167 Adding support for mouse mm10 cytoband information

v2.1.6

Improvements

• Introduces Travis CI to the repository

Bugfixes

• #158 Fix issue to ignore reads that have unmapped mates when gathering flanking evidence.

v2.1.4

BugFix

• Warn only on missing aligner instead of throwing error so that mavis can be used as a package dependency

v2.1.3

BugFixes

• #151 Allow summary to collapse all events by distance if they are called the same way, not just events called by split reads