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I tried pip installing in a conda environment using /opt/miniconda3/envs/TFDB/bin/pip install clustalo
and received the following output:
Collecting clustalo
Using cached clustalo-0.1.2.tar.gz (3.6 kB)
Preparing metadata (setup.py) ... done
Building wheels for collected packages: clustalo
Building wheel for clustalo (setup.py) ... error
error: subprocess-exited-with-error
× python setup.py bdist_wheel did not run successfully.
│ exit code: 1
╰─> [9 lines of output]
running bdist_wheel
running build
running build_ext
building 'clustalo' extension
creating build
creating build/temp.macosx-11.1-arm64-3.10
clang -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O2 -Wall -fPIC -O2 -isystem /opt/miniconda3/envs/TFDB/include -arch arm64 -fPIC -O2 -isystem /opt/miniconda3/envs/TFDB/include -arch arm64 -I/usr/include/clustalo -I/usr/local/include/clustalo -I/opt/miniconda3/envs/TFDB/include/python3.10 -c clustalo.c -o build/temp.macosx-11.1-arm64-3.10/clustalo.o -fopenmp
clang: error: unsupported option '-fopenmp'
error: command '/usr/bin/clang' failed with exit code 1
[end of output]
note: This error originates from a subprocess, and is likely not a problem with pip.
ERROR: Failed building wheel for clustalo
Running setup.py clean for clustalo
Failed to build clustalo
Installing collected packages: clustalo
Running setup.py install for clustalo ... error
error: subprocess-exited-with-error
× Running setup.py install for clustalo did not run successfully.
│ exit code: 1
╰─> [11 lines of output]
running install
/opt/miniconda3/envs/TFDB/lib/python3.10/site-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
warnings.warn(
running build
running build_ext
building 'clustalo' extension
creating build
creating build/temp.macosx-11.1-arm64-3.10
clang -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O2 -Wall -fPIC -O2 -isystem /opt/miniconda3/envs/TFDB/include -arch arm64 -fPIC -O2 -isystem /opt/miniconda3/envs/TFDB/include -arch arm64 -I/usr/include/clustalo -I/usr/local/include/clustalo -I/opt/miniconda3/envs/TFDB/include/python3.10 -c clustalo.c -o build/temp.macosx-11.1-arm64-3.10/clustalo.o -fopenmp
clang: error: unsupported option '-fopenmp'
error: command '/usr/bin/clang' failed with exit code 1
[end of output]
note: This error originates from a subprocess, and is likely not a problem with pip.
error: legacy-install-failure
× Encountered error while trying to install package.
╰─> clustalo
note: This is an issue with the package mentioned above, not pip.
hint: See above for output from the failure.```
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