Add nicer API for using Qurro outside of QIIME 2 but from within Python #307
Labels
enhancement
New feature or request
interoperability
Making Qurro work well with other bioinformatics tools
Analogous to how Emperor has an easy-to-use
emperor.Emperor
interface, shown off here.This probably wouldn't need to differ that much from Emperor's interface.
The current way of generating Qurro plots from within Python (without using QIIME 2) is something like:
...Where the
*file
andoutputdir
strings are replaced with the real file / directory paths you want to use. Note that I haven't tested this personally so I can't guarantee it'll work.A nicer version, although not super consistent with how Emperor's API looks, might work something like:
Hopefully things could be set up so the amount of unique code this would require is minimal (perhaps restructuring things so that
qurro.scripts._plot
actually callsmake_qurro_plot()
directly).Based on discussion with @cameronmartino. This would be useful for the gemelli tutorials.
The text was updated successfully, but these errors were encountered: