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Do not automatically activate slendr Python virtual environment upon loading the package #118

Merged
merged 13 commits into from
Jan 16, 2023
Merged

Do not automatically activate slendr Python virtual environment upon loading the package #118

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1a1fe55
Stop implicit Python activation (move into init_env())
bodkan Jan 11, 2023
c127ed9
Update NEWS
bodkan Jan 11, 2023
a7ddc3c
Update vignettes
bodkan Jan 11, 2023
1f59ed9
Check for the bundled slendr env in Rmd files
bodkan Jan 12, 2023
4fc1e24
Fix a silly find-and-replace typo
bodkan Jan 12, 2023
6b688a5
Stop installing the dev version locally
bodkan Jan 12, 2023
4bc5424
Update NEWS
bodkan Jan 12, 2023
d2b1b1d
Satisfy two CRAN 'NOTES'
bodkan Jan 12, 2023
5a7aa2a
Reset docs and man contents
bodkan Jan 13, 2023
287095d
Lock in a couple of updates to the docs
bodkan Jan 13, 2023
0b07669
Update manpages, add init_env() calls
bodkan Jan 13, 2023
3f46bf9
Update homepage
bodkan Jan 13, 2023
e65e778
Render homepage and manuals
bodkan Jan 13, 2023
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Check for the bundled slendr env in Rmd files
  • Loading branch information
@bodkan
bodkan committed Jan 12, 2023
commit 1f59ed920d9c7f3fa5697b49fa04e9b360d264c0
2 changes: 1 addition & 1 deletion README.Rmd
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@@ -1,7 +1,7 @@
<!-- README.md is generated from README.Rmd. Edit that file instead. -->

```{r, include = FALSE}
env_present <- slendr:::check_env_present()
env_present <- slendr:::is_slendr_env_present()()

knitr::opts_chunk$set(
collapse = TRUE,
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2 changes: 1 addition & 1 deletion vignettes/vignette-01-tutorial.Rmd
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Expand Up @@ -13,7 +13,7 @@ vignette: >
---

```{r, include = FALSE}
env_present <- slendr:::check_env_present()
env_present <- slendr:::is_slendr_env_present()()

knitr::opts_chunk$set(
collapse = FALSE,
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2 changes: 1 addition & 1 deletion vignettes/vignette-02-grid-model.Rmd
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Expand Up @@ -8,7 +8,7 @@ vignette: >
---

```{r, include = FALSE}
env_present <- slendr:::check_env_present()
env_present <- slendr:::is_slendr_env_present()()

knitr::opts_chunk$set(
collapse = FALSE,
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2 changes: 1 addition & 1 deletion vignettes/vignette-03-interactions.Rmd
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Expand Up @@ -8,7 +8,7 @@ vignette: >
---

```{r, include = FALSE}
env_present <- slendr:::check_env_present()
env_present <- slendr:::is_slendr_env_present()()

knitr::opts_chunk$set(
collapse = FALSE,
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2 changes: 1 addition & 1 deletion vignettes/vignette-05-tree-sequences.Rmd
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Expand Up @@ -8,7 +8,7 @@ vignette: >
---

```{r, include = FALSE}
env_present <- slendr:::check_env_present()
env_present <- slendr:::is_slendr_env_present()()

knitr::opts_chunk$set(
collapse = FALSE,
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2 changes: 1 addition & 1 deletion vignettes/vignette-06-locations.Rmd
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Expand Up @@ -8,7 +8,7 @@ vignette: >
---

```{r, include = FALSE}
env_present <- slendr:::check_env_present()
env_present <- slendr:::is_slendr_env_present()()

knitr::opts_chunk$set(
collapse = FALSE,
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2 changes: 1 addition & 1 deletion vignettes/vignette-07-backends.Rmd
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Expand Up @@ -11,7 +11,7 @@ vignette: >
---

```{r, include = FALSE}
env_present <- slendr:::check_env_present()
env_present <- slendr:::is_slendr_env_present()()

knitr::opts_chunk$set(
collapse = FALSE,
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2 changes: 1 addition & 1 deletion vignettes/vignette-08-nonslendr-tskit.Rmd
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Expand Up @@ -8,7 +8,7 @@ vignette: >
---

```{r, include = FALSE}
env_present <- slendr:::check_env_present()
env_present <- slendr:::is_slendr_env_present()()

knitr::opts_chunk$set(
collapse = TRUE,
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2 changes: 1 addition & 1 deletion vignettes/vignette-09-paper.Rmd
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Expand Up @@ -8,7 +8,7 @@ vignette: >
---

```{r, include = FALSE}
env_present <- slendr:::check_env_present()
env_present <- slendr:::is_slendr_env_present()()
eval_chunk <- Sys.which("slim") != "" && env_present && Sys.getenv("RUNNER_OS") != "macOS"

knitr::opts_chunk$set(
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