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Support for CSI indexing #7

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brettChapman opened this issue Feb 22, 2023 · 2 comments
Open

Support for CSI indexing #7

brettChapman opened this issue Feb 22, 2023 · 2 comments

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@brettChapman
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Hi

Will there be support for CSI indexing? Currently I'm getting errors when I run createVCFplot. It tries to index with TBI and recommends I use CSI indexing.

I'm working with a large plant genome.

Thanks.

@rmormando
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Did you ever figure out this error? I'm having similar issues as well

@Michael-Zelenoborsky-Long

I've also encountered this issue. Pisum (Lathyrus oleraceus) ZW6 genome contains coordinates too large for tbi indices.
Got this error from bcftools index:

[E::hts_idx_check_range] Region 537909476..537909477 cannot be stored in a tbi index. Try using a csi index
CSI index can be built, but it is ignored by plotVCF.

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