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Issues list

Add remaining systems from Amber14 benchmark suite to testsystems
#51 opened Apr 22, 2015 by jchodera
Add a few smaller receptor:ligand complexes in explicit and implicit solvent
#9 opened Nov 15, 2014 by jchodera
Create new SrcImplicit and SrcExplicit examples
#10 opened Nov 25, 2014 by jchodera
2
Add simple test systems for binding free energies
#11 opened Nov 25, 2014 by jchodera
1
Convert nosetests over to use test generators instead of huge tests
#14 opened Nov 25, 2014 by jchodera
Add (optional) topology to testSystems 🌠 enhancement
#20 opened Nov 29, 2014 by jhprinz
4
Add testsimulations to set up simulations including integrator and system 🌠 enhancement
#21 opened Dec 3, 2014 by jchodera
GHMC is slow
#22 opened Dec 5, 2014 by kyleabeauchamp
17
Add fluctuation properties to analytic computed properties for testsystems
#31 opened Jan 13, 2015 by kyleabeauchamp
Make testsystem.system and testsystem.topology mutable rather than returning a deep copy
#41 opened Mar 11, 2015 by jchodera
Roll a new release and update conda build
#43 opened Mar 12, 2015 by jchodera
@jchodera
Implement advanced HMC Integrators
#44 opened Mar 22, 2015 by kyleabeauchamp
Add host-guest system to testsystems
#6 opened Nov 9, 2014 by jchodera
Follow-up study on hydrogen mass repartitioning (HMR) schemes?
#46 opened Mar 31, 2015 by jchodera
9
Add large GPCR system for benchmarking
#52 opened Apr 22, 2015 by jchodera
2
Add convenience methods or properties to testsystems to get sets of systems for testing
#63 opened May 13, 2015 by jchodera
1
Alternatives to PME
#71 opened Jun 1, 2015 by jchodera
Parallelize test-openmm-platforms
#74 opened Jun 4, 2015 by jchodera
Add autogenerated API documentation
#77 opened Jun 27, 2015 by jchodera
3
Add TestSystem.minimize() function
#78 opened Jul 3, 2015 by jchodera
Add setTemperature() method to VVVRIntegrator (and other integrators)
#82 opened Jul 6, 2015 by jchodera
MetropolisMonteCarloIntegrator doesn't constrain positions?
#83 opened Aug 4, 2015 by rmcgibbo
2
Implement FIRE minimizer as a CustomIntegrator
#85 opened Aug 24, 2015 by jchodera
Implement Nesterov minimizer
#86 opened Aug 24, 2015 by jchodera
Decouple checkpoint_interval and online_analysis_interval
#770 opened Jan 31, 2025 by ianmkenney 0.25
@ijpulidos
ProTip! Adding no:label will show everything without a label.