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Washington University
- St Louis, MO
- https://mblab.wustl.edu/
- https://orcid.org/0000-0002-2890-4242
- in/chase-mateusiak-7a419a279
Highlights
- Pro
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yeastdnnexplorer Public
Forked from BrentLab/yeastdnnexplorerA development environment to explore implementations of deep neural networks for predicting the relationship between transcription factor and target genes using binding and perturbation data
Python Other UpdatedOct 6, 2024 -
yeastregulatorydb Public
A Django app which defines a database and API to data related to yeast gene regulation
Python Other UpdatedSep 11, 2024 -
callingCardsTools Public
A collection of objects and functions to work with calling cards sequencing tools. See docs at https://cmatkhan.github.io/callingCardsTools
Python Other UpdatedSep 11, 2024 -
sarek Public
Forked from nf-core/sarekAnalysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
Nextflow MIT License UpdatedAug 24, 2024 -
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website Public
Forked from nf-core/websiteCode and files for the main nf-core website.
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parsing_yeast_database_data Public
This project stores the data, scripts, citation and links which describe the source and transformations on externally produced data which is added to the yeast CallingCards database
R UpdatedJun 28, 2024 -
dragon_seg_fault_cneoformans Public
data to reproduce a segmentation fault in dragmap
1 UpdatedJun 19, 2024 -
nf_core_modules Public
Forked from nf-core/modulesRepository to host tool-specific module files for the Nextflow DSL2 community!
Nextflow MIT License UpdatedJun 5, 2024 -
bioconda-recipes Public
Forked from bioconda/bioconda-recipesConda recipes for the bioconda channel.
Shell MIT License UpdatedJun 5, 2024 -
callingcards Public
Forked from nf-core/callingcardsA pipeline for processing calling cards data
Nextflow MIT License UpdatedMay 24, 2024 -
QTLseqr Public
Forked from bmansfeld/QTLseqrQTLseqr is an R package for QTL mapping using NGS Bulk Segregant Analysis
R UpdatedMay 20, 2024 -
BSA Public
A collection of functions intended to facilitate bulk segregant analysis of cryptococcus neoformans strains associated with capsule formation
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yeastregulatorydbstack Public
an aws cdk stack for rds/redis/django/celery apps
Python UpdatedFeb 28, 2024 -
Python GNU General Public License v3.0 Updated
Feb 27, 2024 -
PascalX Public
Forked from BergmannLab/PascalX -
corrmeta Public
Forked from wsjung/corrmetaR implementation of Correlated Meta-Analysis (CMA) by the Province Lab
R MIT License UpdatedFeb 14, 2024 -
cookiecutter-django Public
Forked from cookiecutter/cookiecutter-djangoCookiecutter Django is a framework for jumpstarting production-ready Django projects quickly.
Python BSD 3-Clause "New" or "Revised" License UpdatedDec 20, 2023 -
shinyngs Public
Forked from pinin4fjords/shinyngsShiny apps for NGS etc based on reusable components created using Shiny modules
HTML GNU Affero General Public License v3.0 UpdatedDec 14, 2023 -
llfsRnaseq Public
An R package which stores the code used to process Long Life Family Study RNA sequencing from fastq to analysis releases
R GNU General Public License v3.0 UpdatedNov 27, 2023 -
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test-datasets Public
Forked from nf-core/test-datasetsTest data to be used for automated testing with the nf-core pipelines
MIT License UpdatedOct 31, 2023 -
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cse587Autils Public
Forked from CSE587A-permanent-org/cse587AutilsA set of classes and functions to be used in CSE 587A
Python GNU General Public License v3.0 UpdatedSep 28, 2023 -
c8_kn99_transcriptome_eda Public
Comparing the stringtie results from C8 and KN99 RNAseq
HTML UpdatedSep 7, 2023 -
labretriever Public
A simplified HTTP interface for lab-centric databases
R Other UpdatedSep 6, 2023 -
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Comparative-Annotation-Toolkit Public
Forked from ComparativeGenomicsToolkit/Comparative-Annotation-ToolkitPython Apache License 2.0 UpdatedAug 17, 2023 -
ysp2Compare Public
Forked from dkim97/ysp2Comparecode for suppressor analysis
R UpdatedJun 26, 2023 -