Quickly search, compare, and analyze genomic and metagenomic data sets.

The Python programming language

MinHash, LSH, LSH Forest, Weighted MinHash, HyperLogLog, HyperLogLog++, LSH Ensemble and HNSW

Denoising Autoencoders for Phenotype Stratification

Data and code related to the paper "ADAGE-Based Integration of Publicly Available Pseudomonas aeruginosa..." Jie Tan, et al · mSystems · 2016

The ReScience journal. Reproducible Science is Good. Replicated Science is better.

Sphinx extension for automatic generation of an example gallery

NeatFreq/Automaton Reference-Free Coverage Reduction Distribution Package

Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes

Annocript is a pipeline for the annotation of de-novo generated transcriptomes. It executes BLAST analysis with UniProt, NCBI Conserved Domain Database and Nucleotide divisions, Gene Ontology, UniP…

Independent technology for modern publishing, memberships, subscriptions and newsletters.

⛔️ [SUSPENDED] Writing the rOpenSci book on GitHub

Static website generator for sciencey people

Intermediate and Advanced Software Carpentry tutorial material

My blog.

Test project for software carpentry

Paper source, analysis notebook, and data generation/analysis scripts for diginorm paper

Meep! A simple messageboard implementation for a class.

practice for putting things in repository

Simple probabilistic de Bruijn graph representation

solition to brows a large debruin graph

genome annotation