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Commits on Jun 27, 2023

• updating solubleMPNN weights trained with a larger set of excluded membrane proteins

  dauparas

  committed
  8907e66

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Commits on May 24, 2023

• do not allow using --ca_only and --use_soluble_model at the same time

  dauparas

  committed
  2d5c32b

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Commits on May 17, 2023

• adding cif parsing

  dauparas

  committed
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Commits on Apr 5, 2023

• adding pssm bias example

  dauparas

  committed
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Commits on Mar 24, 2023

• add a list of excluded pdbs for training soluble_model_weights

  dauparas

  committed
  be1d37b

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Commits on Mar 20, 2023

• adding ProteinMPNN weights trained only on soluble proteins

  dauparas

  committed
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Commits on Nov 29, 2022

• Merge pull request #33 from roccomoretti/roccomoretti/no-fatal-no-git

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  dauparas

  authored
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• add scoring option from fasta files and printing suppress flag

  dauparas

  committed
  8491e99

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Commits on Nov 28, 2022

• Suppress warning when using release version.

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  roccomoretti

  authored
  1bf27a0

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Commits on Nov 4, 2022

• adding example submit script

  dauparas

  committed
  9018e57

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• add num_edges and noise_level to training script outputs

  dauparas

  committed
  30ce28f

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Commits on Oct 27, 2022

• Merge branch 'main' of https://github.com/dauparas/ProteinMPNN

  dauparas

  committed
  78fdc70

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• small fix

  dauparas

  committed
  02b135f

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Commits on Oct 26, 2022

• testing training script on google colab

  dauparas

  committed
  525f332

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• update readme

  dauparas

  committed
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• add license

  dauparas

  committed
  b34aa84

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• adding training data and training scripts

  dauparas

  committed
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Commits on Sep 30, 2022

• hiding future warnings from jax

  sokrypton

  committed
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Commits on Aug 19, 2022

• updating to work with latest changes

  dauparas

  committed
  905b008

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• update to work with changes

  dauparas

  committed
  d9af74f

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• updating to work with the latest changes

  dauparas

  committed
  ca7d822

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• update README with output

  dauparas

  committed
  8f864cf

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• upadate README

  dauparas

  committed
  5c0ca74

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• merging vanilla and CA ProteinMPNN versions into one script

  dauparas

  committed
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Commits on Aug 17, 2022

• small README update

  dauparas

  committed
  015ff82

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• update h_V_stack for fixed regions - thanks to Chentong Wang for spotting this

  dauparas

  committed
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• allow to specify a random seed

  dauparas

  committed
  97d62c7

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• remove type=bool since action="store_true" is given

  dauparas

  committed
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• Merge pull request #16 from benf549/main

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  dauparas

  authored
  1f63a79

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• remove erroneous space when parsing for backbone oxygen atoms.

  benf549

  committed
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• Merge pull request #12 from CyrusBiotechnology/deduplicate-helper-scripts

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  dauparas

  authored
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Commits on Jul 27, 2022

• deduplicating helper scripts

  decarboxy

  committed
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Commits on Jun 20, 2022

• updating af_backprop version

  sokrypton

  authored
  c602ced

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Commits on Jun 17, 2022

• adding logic to split chains

  sokrypton

  committed
  4ec7228

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• adding support for MMalign (for TMscore compute)

  sokrypton

  committed
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