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Commits on Nov 29, 2017

• Merge branch 'master' into master

  david-w-mead

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  9d8a722

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• Merge branch 'master' into master

  david-w-mead

  authored
  8a03877

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• Before opening a session, check to see if resources are stored in protected (oouth) location. If the connection is not open, open it.

  david-w-mead

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  0344661

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Commits on Nov 28, 2017

• Merge pull request igvteam#493 from igvteam/update_build_copyrights

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  jrobinso

  authored
  cfa5a9c

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• Updated copyrights on the Ant build scripts.

  davideby

  committed
  60e44a1

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Commits on Nov 24, 2017

• Merge pull request igvteam#487 from Seraff/master

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  jrobinso

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  7b659e0

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Commits on Nov 21, 2017

• Fixes genome coordinates output formatting

  Seraff

  committed
  99d200d

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Commits on Nov 18, 2017

• Adds preventing genome coordinates from showing in multi-chromosome mode

  Seraff

  committed
  a08861a

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Commits on Nov 17, 2017

• Moves genome coordinates output to the pointer

  Seraff

  committed
  42a1bc9

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• Adds genome coordinates output in ruler mode

  Seraff

  committed
  d6ba30d

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Commits on Nov 13, 2017

• variant review -- work in progress

  jrobinso

  committed
  34ce203

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Commits on Nov 9, 2017

• Support for json genomes

  jrobinso

  committed
  78a2f9f

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• null check for sequence tile

  jrobinso

  committed
  c968e4c

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Commits on Nov 7, 2017

• Replace SortableCollection with earlier version -- latest version broken for IGV usage pattern

  jrobinso

  committed
  c0d54b7

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Commits on Nov 6, 2017

• Add "snappy" jar -- htsjdk requirement

  jrobinso

  committed
  f95e4b6

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• Add "ucscID" to session object.

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  jrobinso

  committed
  8c0922b

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Commits on Nov 5, 2017

• patch the htsjdk to handle signed urls to tabix indexed files. Fixes igvteam#473

  jrobinso

  committed
  ea09944

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Commits on Nov 4, 2017

• Support for uploading images to GCS

  jrobinso

  committed
  aa5a917

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Commits on Oct 31, 2017

• Support PAF format. Minimal support -- ignores cigar tag if present. Fixes igvteam#478

  jrobinso

  committed
  816eeae

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• bug fix -- wg scores should be sorted.

  jrobinso

  committed
  e0a593d

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• bigwig improvement to whole-genome query

  jrobinso

  committed
  32a0f4b

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Commits on Oct 30, 2017

• Merged track autoscale bug

  jrobinso

  committed
  0bad241

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• for informative error for unrecognized file format

  jrobinso

  committed
  b671beb

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Commits on Oct 20, 2017

• Fix NPE error when restoring session

  jrobinso

  committed
  f153397

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Commits on Oct 13, 2017

• java 9 command line switches

  jrobinso

  committed
  1679bb4

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Commits on Oct 12, 2017

• Mac bundle update

  jrobinso

  committed
  1206a8a

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• Remove non-working Java 9 jnlp flags

  jrobinso

  committed
  e74d634

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• Update command lines for Java 9 (JAXB module)

  jrobinso

  committed
  a309868

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Commits on Oct 5, 2017

• Possible fix for Windows 10 genome download problem (rename fails).

  jrobinso

  committed
  636eb62

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Commits on Oct 4, 2017

• Merge pull request igvteam#470 from julianhess/OAuth_tweak

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  jrobinso

  authored
  86b669c

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• Added option to manually copy+paste OAuth URL

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  julianhess

  committed
  479ac17

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• Test for "DIRECT" proxy type (i.e. no proxy).

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  jrobinso

  committed
  fd60d5b

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Commits on Oct 2, 2017

• Fix memory leak -- features not released when track is removed

  jrobinso

  committed
  ee7296d

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Commits on Oct 1, 2017

• Update memory settings for window .bat file (from 1200 mb to 4000 mb)

  jrobinso

  committed
  6252d1c

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Commits on Sep 30, 2017

• null check in shutdown thread

  jrobinso

  committed
  2b237bd

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