Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Why do we have the protein reordering #4

Open
dagap opened this issue Nov 22, 2021 · 0 comments
Open

Why do we have the protein reordering #4

dagap opened this issue Nov 22, 2021 · 0 comments

Comments

@dagap
Copy link

dagap commented Nov 22, 2021

In your dataloader, you have the following lines:

self.alphabet = "ACDEFGHIKLMNPQRSTVWY"
self.reorder_alphabet = "DEKRHNQSTPGAVILMCFYW"

Could you please comment on this alphabet reordering? I guess the ordering orders them by some properties of the amino acids but I am not sure what purpose it is serving in the code.
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
1 participant
@dagap