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🆔 Scan contig files against PubMLST typing schemes
Making whole bacterial genome sequencing data analysis easy
Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files
Repository for https://www.nature.com/articles/s41598-019-47758-5
Giving a contig name and positions (start and end), extractSeq can return the corresponding sequence from your fasta.
A single perl script to make text file tables manipulating in command line as easy as in R package dplyr