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covid-model
covid-model
 
 
images
images
 
 
scripts
scripts
 
 
2020-03-13-starter-notebook.ipynb
2020-03-13-starter-notebook.ipynb
 
 
2020-03-16-covid19_growth.ipynb
2020-03-16-covid19_growth.ipynb
 
 
2020-03-28-international-growth-analysis.ipynb
2020-03-28-international-growth-analysis.ipynb
 
 
COVID-19 South Africa - Data Analysis and Visualization.ipynb
COVID-19 South Africa - Data Analysis and Visualization.ipynb
 
 
Coronavirus - Comparing South Africa Cases to other Countries.Rmd
Coronavirus - Comparing South Africa Cases to other Countries.Rmd
 
 
LICENSE_for_twiecki_growth_code.md
LICENSE_for_twiecki_growth_code.md
 
 
README.md
README.md
 
 
Realtime R0.ipynb
Realtime R0.ipynb
 
 
ZA_Choropleth_Covid-19.ipynb
ZA_Choropleth_Covid-19.ipynb
 
 
covid19_country_comparison.ipynb
covid19_country_comparison.ipynb
 
 
covid19_growth.ipynb
covid19_growth.ipynb
 
 
covid19_growth_bayes.ipynb
covid19_growth_bayes.ipynb
 
 
covid19_growth_for_sa.ipynb
covid19_growth_for_sa.ipynb
 
 
covid19za-process_NDOH_whatsapp_texts.ipynb
covid19za-process_NDOH_whatsapp_texts.ipynb
 
 
mobility_south_africa.ipynb
mobility_south_africa.ipynb
 
 

README.md

Put notebooks in here

How to update the Coronavirus - Comparing South Africa Cases to other Countries visual

For the international numbers, the file used here is sourced from this GitHub repo CSSE at Johns Hopkins University.

The visual was created using RStudio and the tidyverse and rmarkdown packages.

Notebooks for analysis and modelling

This folder contains notebooks for analysis and modelling of the COVID-19 data. Some use the data in the repo, some fetch data from external data.

Current notebooks

  • Growth of South Africa vs. Some of the world [Notebook]

  • Growth of South Africa Provinces [Notebook]

  • Exploratory Data Analysis and Visualization on SA Covid 19 data sets Source

  • Reproduction rate estimation from https://github.com/k-sys/covid-19 adjusted for South Africa - Notebook

  • Choropleth visualization showing the spread of Covid-19 across the provinces of South Africa - Notebook

Where do I start?

Running the notebooks

You can pull the repo and then run the notebooks and make adjustments as I need.

Getting ideas

See the great resource from fastai on different analysis and modelling notebooks. URL

TODO

Have simple link to mybinder for all notebooks